Publications

Publications that cite VBRN. Publications listed are from PubMedCentral AND PubMed sorted by publication date. Click on any publication to read. (Links open in new tab.)

1.) Chandra H, Gupta MK, Lam YW, Yadav JS (2024 Feb 12). Predominantly Orphan Secretome in the Lung Pathogen Mycobacterium abscessus Revealed by a Multipronged Growth-Phase-Driven Strategy. Microorganisms, 12(2), 378. doi:10.3390/microorganisms12020378. PMC10892769

2.) Deng B, Vanagas L, Alonso AM, Angel SO (2023 Dec 29). Proteomics Applications in Toxoplasma gondii: Unveiling the Host–Parasite Interactions and Therapeutic Target Discovery. Pathogens, 13(1), 33. doi:10.3390/pathogens13010033. PMC10821451

3.) Hassett-Walker C (2023 Nov 29). Recovering Individuals’ Feelings About Addict and Alcoholic as Stigmatized Terms: Implications for Treatment. Substance Abuse: Research and Treatment, 17(0), 11782218231213769. doi:10.1177/11782218231213769. PMC10687927

4.) Ahmed OM, Crocker A, Murthy M (2023 Nov 10). Transcriptional profiling of Drosophila male-specific P1 (pC1) neurons. bioRxiv, (0), 2023.11.07.566045. doi:10.1101/2023.11.07.566045. PMC10659367

5.) Peterson KL, Snyder JP, Despres HW, Schmidt MM, Eckstrom KM, Unger AL, Carmolli MP, Sevigny JL, Shirley DJ, Dragon JA, Thomas WK, Bruce EA, Crothers JW (2023 Oct 20). Determining the impact of vaccination on SARS-CoV-2 RT-PCR cycle threshold values and infectious viral titres. Access Microbiology, 5(10), 000597.v3. doi:10.1099/acmi.0.000597.v3. PMC10634488

6.) Kang W, Hamza A, Curry AM, Korade E, Donu D, Cen Y (2023 Oct 23). Activation of SIRT6 Deacetylation by DNA Strand Breaks. ACS Omega, 8(44), 41310-41320. doi:10.1021/acsomega.3c04859. PMC10633859

7.) Hoffman ET, Uriarte JJ, Uhl FE, Eckstrom K, Tanneberger AE, Becker C, Moulin C, Asarian L, Ikonomou L, Kotton DN, Weiss DJ (2023 Jul 25). Human alveolar hydrogels promote morphological and transcriptional differentiation in iPSC-derived alveolar type 2 epithelial cells. Scientific Reports, 13(0), 12057. doi:10.1038/s41598-023-37685-x. PMC10368739

8.) Curd EE, Gal L, Gallego R, Nielsen S, Gold Z (2023 Jun 3). rCRUX: A Rapid and Versatile Tool for Generating Metabarcoding Reference libraries in R. bioRxiv, (0), 2023.05.31.543005. doi:10.1101/2023.05.31.543005. PMC10312559

9.) Haverkamp HC, Luu P, DeCato TW, Petrics G (2023 Oct 11). Artificial neural network identification of exercise expiratory flow-limitation in adults. Scientific Reports, 13(0), 17247. doi:10.1038/s41598-023-44331-z. PMC10567738

10.) Mohammed R, Ogadi P, Seth DM Jr, Vibho A, Gallant SK, Waterman R (2023 Sep 15). Synthesis and Characterization of 2-(((2,7-Dihydroxynaphthalen-1-yl)methylene)amino)-3′,6′-bis(ethylamino)-2′,7′-dimethylspiro[isoindoline-1,9′-xanthen]-3-one and Colorimetric Detection of Uranium in Water. Molbank, 2023(3), M1725. doi:10.3390/m1725. PMC10540563

11.) Drummond IY, DePaolo A, Krieger M, Driscoll H, Eckstrom K, Spatafora GA (2023 Sep 11). Small regulatory RNAs are mediators of the Streptococcus mutans SloR regulon. Journal of Bacteriology, 205(9), e00172-23. doi:10.1128/jb.00172-23. PMC10521355

12.) Corteselli EM, Sharafi M, Hondal R, MacPherson M, White S, Lam YW, Gold C, Manuel AM, van der Vliet A, Schneebeli ST, Anathy V, Li J, Janssen-Heininger YM (2023 Jul 28). Structural and functional fine mapping of cysteines in mammalian glutaredoxin reveal their differential oxidation susceptibility. Nature Communications, 14(0), 4550. doi:10.1038/s41467-023-39664-2. PMC10382592

13.) Eckert CD, Tarleton EK, Pellerin J, Mooney N, Gell NM (2022 Apr 29). Nutrition Risk is Associated With Falls Risk in an Observational Study of Community-Dwelling, Rural, Older Adults. Journal of aging and health, 34(6-8), 1125-1134. doi:10.1177/08982643221096944. PMC10370346

14.) Sharma C, Donu D, Curry AM, Barton E, Cen Y (2023 Apr 14). Multifunctional activity-based chemical probes for sirtuins. RSC Advances, 13(17), 11771-11781. doi:10.1039/d3ra02133e. PMC10103746

15.) Vanagas L, Muñoz D, Cristaldi C, Ganuza A, Nájera R, Bonardi MC, Turowski VR, Guzman F, Deng B, Kim K, Sullivan WJ Jr, Angel SO (2023 Feb 24). Histone variant H2B.Z acetylation is necessary for maintenance of Toxoplasma gondii biological fitness. bioRxiv, (0), 2023.02.14.528480. doi:10.1101/2023.02.14.528480. PMC9949044

16.) Singh AK, Phillips M, Alkrimi S, Tonelli M, Boyson SP, Malone KL, Nix JC, Glass KC (2022 Oct 31). Structural insights into acetylated histone ligand recognition by the BDP1 bromodomain of Plasmodium falciparum. International journal of biological macromolecules, 223(Pt A), 316-326. doi:10.1016/j.ijbiomac.2022.10.247. PMC10093686

17.) McKean M, Napoli FR, Hasan T, Joseph T, Wheeler A, Beebe K, Soriano-Cruz S, Kawano M, Cave C (2023 Mar 21). GDE6 promotes progenitor identity in the vertebrate neural tube. Frontiers in Neuroscience, 17(0), 1047767. doi:10.3389/fnins.2023.1047767. PMC10070723

18.) Munera López J, Alonso AM, Figueras MJ, Saldarriaga Cartagena AM, Hortua Triana MA, Diambra L, Vanagas L, Deng B, Moreno SN, Angel SO (2023 Mar 1). Analysis of the Interactome of the Toxoplasma gondii Tgj1 HSP40 Chaperone. Proteomes, 11(1), 9. doi:10.3390/proteomes11010009. PMC10056330

19.) Farrell M, Fairfield H, Karam M, D'Amico A, Murphy CS, Falank C, Pistofidi RS, Cao A, Marinac CR, Dragon JA, McGuinness L, Gartner CG, Iorio RD, Jachimowicz E, DeMambro V, Vary C, Reagan MR (2023 Mar 7). Targeting the fatty acid binding proteins disrupts multiple myeloma cell cycle progression and MYC signaling. eLife, 12(0), e81184. doi:10.7554/eLife.81184. PMC9995119

20.) Haverkamp HC, Kaminsky DA, McPherson SM, Irvin CG (2021 Aug). Spirometric Response to Bronchodilator and Eucapnic Voluntary Hyperpnea in Adults With Asthma. Respiratory Care, 66(8), 1282-1290. doi:10.4187/respcare.08421. PMC9994366

21.) Tang-Siegel GG (2023 Feb 3). Human Serum Mediated Bacteriophage Life Cycle Switch in Aggregatibacter actinomycetemcomitans Is Linked to Pyruvate Dehydrogenase Complex. Life, 13(2), 436. doi:10.3390/life13020436. PMC9959103

22.) Klimenko O, Luu P, Dominelli P, Noggle N, Petrics G, Haverkamp HC (2023 Feb 23). Effect of exercise‐induced bronchoconstriction on the configuration of the maximal expiratory flow‐volume curve in adults with asthma. Physiological Reports, 11(4), e15614. doi:10.14814/phy2.15614. PMC9950550

23.) Chandrasekaran R, Bruno SR, Mark ZF, Walzer J, Caffry S, Gold C, Kumar A, Chamberlain N, Butzirus IM, Morris CR, Daphtary N, Aliyeva M, Lam YW, van der Vliet A, Janssen-Heininger Y, Poynter ME, Dixon AE, Anathy V (2022 Dec 13). Mitoquinone mesylate attenuates pathological features of lean and obese allergic asthma in mice. American Journal of Physiology - Lung Cellular and Molecular Physiology, 324(2), L141-L153. doi:10.1152/ajplung.00249.2022. PMC9902225

24.) Sisti HM, Beebe A, Bishop M, Gabrielsson E (2022 Nov 11). A brief review of motor imagery and bimanual coordination. Frontiers in Human Neuroscience, 16(0), 1037410. doi:10.3389/fnhum.2022.1037410. PMC9693758

25.) Hoffman ET, Uhl FE, Asarian L, Deng B, Becker C, Uriarte JJ, Downs I, Young B, Weiss DJ (2022 Dec 24). Regional and Disease Specific Human Lung Extracellular Matrix Composition. Biomaterials, 293(0), 121960. doi:10.1016/j.biomaterials.2022.121960. PMC9868084

26.) Hassett-Walker C (2022 May 24). The Longitudinal Impact of Arrest, Criminal Conviction, and Incarceration on Smoking Classes. Tobacco Use Insights, 15(0), 1179173X221089710. doi:10.1177/1179173X221089710. PMC9134438

27.) Zhao X, Zhang F, Kandel SR, Brau F, He JJ (2022 May 3). HIV Tat and cocaine interactively alter genome-wide DNA methylation and gene expression and exacerbate learning and memory impairments. Cell reports, 39(5), 110765. doi:10.1016/j.celrep.2022.110765. PMC9615417

28.) Palmer CM, Wershoven NL, Martinson SJ, ter Hofstede HM, Kress WJ, Symes LB (2022 Feb 21). Patterns of Herbivory in Neotropical Forest Katydids as Revealed by DNA Barcoding of Digestive Tract Contents. Diversity, 14(2), 152. doi:10.3390/d14020152. PMC8974511

29.) Rossman MJ, Petrics G, Klansky A, Craig K, Irvin CG, Haverkamp HC (2022 Feb 1). EXERCISE-INDUCED BRONCHODILATION EQUALIZES EXERCISE VENTILATORY MECHANICS DESPITE VARIABLE BASELINE AIRWAY FUNCTION IN ASTHMA. Medicine and science in sports and exercise, 54(2), 258-266. doi:10.1249/MSS.0000000000002793. PMC8892975

30.) White DS, Mongeluzi D, Curry AM, Donu D, Cen Y (2022 Jan 14). Facile synthesis of photoactivatable adenosine analogs. RSC Advances, 12(4), 2219-2226. doi:10.1039/d1ra08794k. PMC8979134

31.) Preston JC, Wooliver R, Driscoll H, Coughlin A, Sheth SN (2021 Dec 12). Spatial variation in high temperature-regulated gene expression predicts evolution of plasticity with climate change in the scarlet monkeyflower. Molecular ecology, 31(4), 1254-1268. doi:10.1111/mec.16300. PMC8821412

32.) Baldwin H, Landesman WJ, Borgmann-Winter B, Allen D (2021 Oct 13). A Geographic Information System Approach to Map Tick Exposure Risk at a Scale for Public Health Intervention. Journal of Medical Entomology, 59(1), 162-172. doi:10.1093/jme/tjab169. PMC8755993

33.) Kumar A, Elko E, Bruno SR, Mark ZF, Chamberlain N, Mihavics BK, Chandrasekaran R, Walzer J, Ruban M, Gold C, Lam YW, Ghandikota S, Jegga AG, Gomez JL, Janssen-Heininger YM, Anathy V (2021 Aug 16). Inhibition of PDIA3 in club cells attenuates osteopontin production and lung fibrosis. Thorax, 77(7), 669-678. doi:10.1136/thoraxjnl-2021-216882. PMC8847543

34.) Linderman MD, Paudyal C, Shakeel M, Kelley W, Bashir A, Gelb BD (2021 Jul 1). NPSV: A simulation-driven approach to genotyping structural variants in whole-genome sequencing data. GigaScience, 10(7), giab046. doi:10.1093/gigascience/giab046. PMC8246072

35.) Rompikuntal PK, Kent RS, Foe IT, Deng B, Bogyo M, Ward GE (2021 May 19). Blocking Palmitoylation of Toxoplasma gondii Myosin Light Chain 1 Disrupts Glideosome Composition but Has Little Impact on Parasite Motility. mSphere, 6(3), e00823-20. doi:10.1128/mSphere.00823-20. PMC8265671

36.) Yano J, Wells R, Lam YW, Van Houten JL (2021 May 4). Ciliary Ca2+ pumps regulate intraciliary Ca2+ from the action potential and may co-localize with ciliary voltage-gated Ca2+ channels. The Journal of Experimental Biology, 224(9), jeb232074. doi:10.1242/jeb.232074. PMC9563298

37.) Aboushousha R, Elko E, Chia SB, Manuel AM, van de Wetering C, van der Velden J, MacPherson M, Erickson C, Reisz JA, D’Alessandro A, Wouters EF, Reynaert NL, Lam YW, Anathy V, van der Vliet A, Seward DJ, Janssen-Heininger YM (2021 May). Glutathionylation chemistry promotes interleukin-1 beta-mediated glycolytic reprogramming and pro-inflammatory signaling in lung epithelial cells. FASEB journal : official publication of the Federation of American Societies for Experimental Biology, 35(5), e21525. doi:10.1096/fj.202002687RR. PMC8073242

38.) Giddings LA, Lountos GT, Kim KW, Brockley M, Needle D, Cherry S, Tropea JE, Waugh DS (2021 Mar 30). Characterization of a broadly specific cadaverine N-hydroxylase involved in desferrioxamine B biosynthesis in Streptomyces sviceus. PLoS ONE, 16(3), e0248385. doi:10.1371/journal.pone.0248385. PMC8009421

39.) Cho J, Costa SK, Wierzbicki RM, Rigby WF, Cheung AL (2021 Mar 1). The extracellular loop of the membrane permease VraG interacts with GraS to sense cationic antimicrobial peptides in Staphylococcus aureus. PLoS Pathogens, 17(3), e1009338. doi:10.1371/journal.ppat.1009338. PMC7951975

40.) Minicucci J, Alfond M, Demuro A, Gerberry D, Latulippe J (2021 Jan 28). Quantifying the dose-dependent impact of intracellular amyloid beta in a mathematical model of calcium regulation in xenopus oocyte. PLoS ONE, 16(1), e0246116. doi:10.1371/journal.pone.0246116. PMC7842920

41.) ECKERT C, GELL NM, WINGOOD M, SCHOLLMEYER J, TARLETON EK (2021). MALNUTRITION RISK, RURALITY, AND FALLS AMONG COMMUNITY-DWELLING OLDER ADULTS. The journal of nutrition, health & aging, 25(5), 624-627. doi:10.1007/s12603-021-1592-8. PMC8100280

42.) Curry AM, Barton E, Kang W, Mongeluzi DV, Cen Y (2020 Dec 22). Development of Second Generation Activity-Based Chemical Probes for Sirtuins. Molecules, 26(1), 11. doi:10.3390/molecules26010011. PMC7792806

43.) Zhang F, Deng CK, Wang M, Deng B, Barber R, Huang G (2020 Dec 3). Identification of novel alternative splicing biomarkers for breast cancer with LC/MS/MS and RNA-Seq. BMC Bioinformatics, 21(Suppl 9), 541. doi:10.1186/s12859-020-03824-8. PMC7713335

44.) Fairfield H, Dudakovic A, Khatib CM, Farrell M, Costa S, Falank C, Hinge M, Murphy CS, DeMambro V, Pettitt JA, Lary CW, Driscoll HE, McDonald MM, Kassem M, Rosen C, Andersen TL, van Wijnen AJ, Jafari A, Reagan MR (2020 Nov 20). Myeloma-modified adipocytes exhibit metabolic dysfunction and a senescence-associated secretory phenotype (SASP). Cancer research, 81(3), 634-647. doi:10.1158/0008-5472.CAN-20-1088. PMC7854508

45.) Panzarino NJ, Krais JJ, Cong K, Peng M, Mosqueda M, Nayak SU, Bond SM, Calvo JA, Doshi MB, Bere M, Ou J, Deng B, Zhu LJ, Johnson N, Cantor SB (2020 Nov 12). Replication Gaps Underlie BRCA-deficiency and Therapy Response. Cancer research, 81(5), 1388-1397. doi:10.1158/0008-5472.CAN-20-1602. PMC8026497

46.) Wang L, Riel LP, Bajrami B, Deng B, Howell AR, Yao X (2020 Nov 11). α-Methylene-β-Lactone Scaffold for Developing Chemical Probes at the Two Ends of the Selectivity Spectrum. Chembiochem : a European journal of chemical biology, 22(3), 505-515. doi:10.1002/cbic.202000605. PMC8114233

47.) Bonney EA, Krebs K, Kim J, Prakash K, Torrance BL, Haynes L, Rincon M (2020 Oct 28). Protective Intranasal Immunization Against Influenza Virus in Infant Mice Is Dependent on IL-6 . Frontiers in Immunology, 11(0), 568978. doi:10.3389/fimmu.2020.568978. PMC7656064

48.) Lloyd JT, McLaughlin K, Lubula MY, Gay JC, Dest A, Gao C, Phillips M, Tonelli M, Cornilescu G, Marunde MR, Evans CM, Boyson SP, Carlson S, Keogh MC, Markley JL, Frietze S, Glass KC (2020 Oct 21). Structural Insights into the Recognition of Mono- and Diacetylated Histones by the ATAD2B Bromodomain. Journal of medicinal chemistry, 63(21), 12799-12813. doi:10.1021/acs.jmedchem.0c01178. PMC7884259

49.) Northrop AC, Avalone V, Ellison AM, Ballif BA, Gotelli NJ (2020 Oct 20). Clockwise and counterclockwise hysteresis characterize state changes in the same aquatic ecosystem. Ecology letters, 24(1), 94-101. doi:10.1111/ele.13625. PMC8278984

50.) Bingul D, Kalra K, Murata EM, Belser A, Dash MB (2020 Sep 20). Persistent Changes in Extracellular Lactate Dynamics Following Synaptic Potentiation. Neurobiology of learning and memory, 175(0), 107314. doi:10.1016/j.nlm.2020.107314. PMC7655607

51.) Giddings LA, Chlipala G, Driscoll H, Bhave K, Kunstman K, Green S, Morillo K, Peterson H, Maienschein-Cline M (2020 Sep 8). Seasonal Ely Copper Mine Superfund site shotgun metagenomic and metatranscriptomic data analysis. Data in Brief, 32(0), 106282. doi:10.1016/j.dib.2020.106282. PMC7494679

52.) Gupta R, Liu Y, Wang H, Nordyke CT, Puterbaugh RZ, Cui W, Varga K, Chu F, Ke H, Vashisth H, Cote RH (2020 Sep 6). Structural Analysis of the Regulatory GAF Domains of cGMP Phosphodiesterase Elucidates the Allosteric Communication Pathway. Journal of molecular biology, 432(21), 5765-5783. doi:10.1016/j.jmb.2020.08.026. PMC7572642

53.) Giddings LA, Chlipala G, Kunstman K, Green S, Morillo K, Bhave K, Peterson H, Driscoll H, Maienschein-Cline M (2020 Aug 12). Characterization of an acid rock drainage microbiome and transcriptome at the Ely Copper Mine Superfund site. PLoS ONE, 15(8), e0237599. doi:10.1371/journal.pone.0237599. PMC7423320

54.) Moeller RW, Seehuus M, Simonds J, Lorton E, Randle TS, Richter C, Peisch V (2020 Aug 4). The Differential Role of Coping, Physical Activity, and Mindfulness in College Student Adjustment. Frontiers in Psychology, 11(0), 1858. doi:10.3389/fpsyg.2020.01858. PMC7417773

55.) Hasan MM, Teixeira JE, Lam YW, Huston CD (2020 Aug 4). Coactosin Phosphorylation Controls Entamoeba histolytica Cell Membrane Protrusions and Cell Motility. mBio, 11(4), e00660-20. doi:10.1128/mBio.00660-20. PMC7407079

56.) Honan MC, Fahey MJ, Fischer-Tlustos AJ, Steele MA, Greenwood SL (2020 Jul 17). Shifts in the Holstein dairy cow milk fat globule membrane proteome that occur during the first week of lactation are affected by parity. Journal of Animal Science and Biotechnology, 11(0), 81. doi:10.1186/s40104-020-00478-7. PMC7367219

57.) KIERNAN LC, OLSEN DM (2020 Jul). Improving clinical competency using simulation technology. Nursing, 50(7), 14-19. doi:10.1097/01.NURSE.0000668448.43535.4f. PMC8130000

58.) Senior EE, Poulin HE, Dobecki MG, Anair BM, Fabian-Fine R (2020 Jun 15). Co-expression of the neuropeptide proctolin and glutamate in the central nervous system, along mechanosensory neurons and leg muscle in Cupiennius salei. Cell and tissue research, 382(2), 281-292. doi:10.1007/s00441-020-03217-6. PMC7606560

59.) Scuderi RA, Lam YW, Ebenstein DB, Tacoma R, Cersosimo LM, Kraft J, Brito AF, Greenwood SL (2020 May 21). Comparative analysis of the skim milk and milk fat globule membrane proteomes produced by Jersey cows grazing pastures with different plant species diversity. Journal of dairy science, 103(8), 7498-7508. doi:10.3168/jds.2019-17726. PMC7992107

60.) Merenstein C, Ward J, Allen D (2020 May). Diplorickettsia Bacteria in an Ixodes scapularis Tick, Vermont, USA. Emerging Infectious Diseases, 26(5), 1036-1038. doi:10.3201/eid2605.191135. PMC7181933

61.) Zhang F, Kuo MD (2020 Mar 31). Rapid Evolution of Expression Levels in Hepatocellular Carcinoma. International journal of computational biology and drug design, 13(5-6), 454-474. doi:10.1504/ijcbdd.2020.10036395. PMC8455107

62.) Honan MC, Greenwood SL (2020 Feb 21). Characterization of variations within the rumen metaproteome of Holstein dairy cattle relative to morning feed offering. Scientific Reports, 10(0), 3179. doi:10.1038/s41598-020-59974-5. PMC7035244

63.) Moeller RW, Seehuus M, Peisch V (2020 Jan 31). Emotional Intelligence, Belongingness, and Mental Health in College Students. Frontiers in Psychology, 11(0), 93. doi:10.3389/fpsyg.2020.00093. PMC7006433

64.) Towers E, Morrison-Taylor A, Demar J, Klansky A, Craig K, Haverkamp HC (2020 Jan 27). ACUTE AND DAILY EFFECTS OF REPEATED VOLUNTARY HYPERPNEA ON PULMONARY FUNCTION IN HEALTHY ADULTS. European journal of applied physiology, 120(3), 625-633. doi:10.1007/s00421-020-04302-y. PMC7299177

65.) Nott MA, Driscoll HE, Takeda M, Vangala M, Corsi SR, Tighe SW (2020 Jan 22). Advanced biofilm analysis in streams receiving organic deicer runoff. PLoS ONE, 15(1), e0227567. doi:10.1371/journal.pone.0227567. PMC6975536

66.) Lam YW, Deng B, Hood C (2019 Dec). Vermont Genetics Network Proteomics Facility. Journal of Biomolecular Techniques : JBT, 30(Suppl), S41. doi:. PMC6938049

67.) Shukla GS, Pero SC, Sun Y‑, Mei L, Zhang F, Sholler G, Krag DN (2019 Nov 16). Multiple antibodies targeting tumor‑specific mutations redirect immune cells to inhibit tumor growth and increase survival in experimental animal models. Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico, 22(7), 1094-1104. doi:10.1007/s12094-019-02235-3. PMC7586733

68.) Landesman WJ, Mulder K, Fredericks LP, Allan BF (2019 Nov 13). Cross-kingdom analysis of nymphal-stage Ixodes scapularis microbial communities in relation to Borrelia burgdorferi infection and load. FEMS Microbiology Ecology, 95(12), fiz167. doi:10.1093/femsec/fiz167. PMC6859517

69.) Ziegler CM, Dang L, Eisenhauer P, Kelly JA, King BR, Klaus JP, Manuelyan I, Mattice EB, Shirley DJ, Weir ME, Bruce EA, Ballif BA, Botten J (2019 Nov 11). NEDD4 family ubiquitin ligases associate with LCMV Z’s PPXY domain and are required for virus budding, but not via direct ubiquitination of Z. PLoS Pathogens, 15(11), e1008100. doi:10.1371/journal.ppat.1008100. PMC6874086

70.) Nabi A, Yano J, Valentine MS, Picariello T, Van Houten JL (2019 Oct 29). SF-Assemblin genes in Paramecium: phylogeny and phenotypes of RNAi silencing on the ciliary-striated rootlets and surface organization. Cilia, 8(0), 2. doi:10.1186/s13630-019-0062-y. PMC6819543

71.) Borgmann-Winter B, Allen D (2019 Oct 14). How the Distance Between Drag-Cloth Checks Affects the Estimate of Adult and Nymphal Ixodes scapularis (Acari: Ixodidae) Density. Journal of Medical Entomology, 57(2), 623-626. doi:10.1093/jme/tjz179. PMC7317148

72.) Seehuus M, Moeller RW, Peisch V (2019 Sep 12). Gender Effects on Mental Health Symptoms and Treatment in College Students. Journal of American college health : J of ACH, 69(1), 95-102. doi:10.1080/07448481.2019.1656217. PMC7065949

73.) Dauerman HL, DeStephan CM, Taatjes Sommer H, Kurchena KC, DeSarno M, Mendoza EG, Henderson A, Schneider DJ (2019 Aug 13). Prolonged Clotting Time Among Patients Undergoing Transcatheter Aortic Valve Replacement. Journal of the American College of Cardiology, 74(6), 820-821. doi:10.1016/j.jacc.2019.06.022. PMC6713224

74.) Dash MB (2019 Jul 29). Infraslow coordination of slow wave activity through altered neuronal synchrony. Sleep, 42(12), zsz170. doi:10.1093/sleep/zsz170. PMC6930134

75.) Allen D, Borgmann–Winter B, Bashor L, Ward J (2019 Jul 24). The Density of the Lyme Disease Vector, Ixodes scapularis (Blacklegged Tick), Differs Between the Champlain Valley and Green Mountains, Vermont. Northeastern naturalist, 26(3), 545-560. doi:10.1656/045.026.0307. PMC6655441

76.) Faundez V, Wynne M, Crocker A, Tarquinio D (2019 Jul 17). Molecular Systems Biology of Neurodevelopmental Disorders, Rett Syndrome as an Archetype. Frontiers in Integrative Neuroscience, 13(0), 30. doi:10.3389/fnint.2019.00030. PMC6650571

77.) Riblet NB, Kenneally L, Shiner B, Watts BV (2019 Jun 28). Healthcare processes contributing to suicide risk in veterans during and after residential substance abuse treatment.. Journal of dual diagnosis, 15(4), 217-225. doi:10.1080/15504263.2019.1629053. PMC6868319

78.) Symes LB, Wershoven NL, Hoeger LO, Ralston JS, Martinson SJ, ter Hofstede HM, Palmer CM (2019 May 3). Applying and refining DNA analysis to determine the identity of plant material extracted from the digestive tracts of katydids. PeerJ, 7(0), e6808. doi:10.7717/peerj.6808. PMC6501762

79.) Engel GL, Taber K, Vinton E, Crocker AJ (2019 Apr 16). Studying alcohol use disorder using Drosophila melanogaster in the era of ‘Big Data’. Behavioral and Brain Functions : BBF, 15(0), 7. doi:10.1186/s12993-019-0159-x. PMC6469124

80.) Corigliano MG, Albarracín RM, Vilas JM, Sánchez López EF, Bengoa Luoni SA, Deng B, Farran I, Veramendi J, Maiale SJ, Sander VA, Clemente M (2019 Apr 13). Heat treatment alleviates the growth and photosynthetic impairment of transplastomic plants expressing Leishmania infantum Hsp 83-Toxoplasma gondii SAG1 fusion protein. Plant science : an international journal of experimental plant biology, 284(0), 117-126. doi:10.1016/j.plantsci.2019.04.011. PMC6785835

81.) Moeller RW, Seehuus M (2019 Mar 29). Loneliness as a Mediator for College Students’ Social Skills and Experiences of Depression and Anxiety. Journal of adolescence, 73(0), 1-13. doi:10.1016/j.adolescence.2019.03.006. PMC6534439

82.) Mikheyeva IV, Thomas JM, Kolar SL, Corvaglia AR, Gaïa N, Leo S, Francois P, Liu GY, Rawat M, Cheung AL (2019 Feb 17). YpdA, a putative bacillithiol disulfide reductase, contributes to cellular redox homeostasis and virulence in Staphylococcus aureus. Molecular microbiology, 111(4), 1039-1056. doi:10.1111/mmi.14207. PMC6458089

83.) Glenney B, O’Connor P (2019 Feb 5). Skateparks as hybrid elements of the city. Journal of urban design, 24(6), 840-855. doi:10.1080/13574809.2019.1568189. PMC6830735

84.) Zhang F, Ding L, Cui L, Barber R, Deng B (2019 Jan 31). Identification of long non-coding RNA-related and –coexpressed mRNA biomarkers for hepatocellular carcinoma. BMC Medical Genomics, 12(Suppl 1), 25. doi:10.1186/s12920-019-0472-0. PMC6357343

85.) Landesman WJ, Mulder K, Allan BF, Bashor LA, Keesing F, LoGiudice K, Ostfeld RS (2019 Jan 12). Potential effects of blood meal host on bacterial community composition in Ixodes scapularis nymphs. Ticks and tick-borne diseases, 10(3), 523-527. doi:10.1016/j.ttbdis.2019.01.002. PMC6441379

86.) DURST ME, TURCIOS A, LAURENCE C, MOSKOVITZ E (2019 Jan 10). Dispersion compensation by a liquid lens (DisCoBALL). Applied optics, 58(2), 428-435. doi:10.1364/AO.58.000428. PMC6342488

87.) Landesman WJ, Freedman ZB, Nelson DM (2019 Jan 9). Seasonal, sub-seasonal and diurnal variation of soil bacterial community composition in a temperate deciduous forest. FEMS Microbiology Ecology, 95(2), fiz002. doi:10.1093/femsec/fiz002. PMC6353803

88.) Hinkle KL, Olsen D (2018 Nov 15). Exposure to the lampricide TFM elicits an environmental stress response in yeast. FEMS Yeast Research, 19(1), foy121. doi:10.1093/femsyr/foy121. PMC6455944

89.) Tarr EA, Fidler BM, Gee KE, Anderson CM, Jager AK, Gallagher NM, Carroll KP, Fabian-Fine R (2018 Nov 8). Distribution of FMRFamide-related peptides and co-localization with glutamate in Cupiennius salei, an invertebrate model system. Cell and tissue research, 376(1), 83-96. doi:10.1007/s00441-018-2949-0. PMC6451683

90.) Glenney B, Mull S (2018 Sep 25). Skateboarding and the Ecology of Urban Space. Journal of sport and social issues, 42(6), 437-453. doi:10.1177/0193723518800525. PMC6269152

91.) Peng M, Cong K, Panzarino NJ, Nayak S, Calvo J, Deng B, Zhu LJ, Morocz M, Hegedus L, Haracska L, Cantor SB (2018 Sep 18). Opposing Roles of FANCJ and HLTF Protect Forks and Restrain Replication during Stress. Cell reports, 24(12), 3251-3261. doi:10.1016/j.celrep.2018.08.065. PMC6218949

92.) Bontemps-Gallo S, Gaviard C, Richards CL, Kentache T, Raffel SJ, Lawrence KA, Schindler JC, Lovelace J, Dulebohn DP, Cluss RG, Hardouin J, Gherardini FC (2018 Aug 31). Global Profiling of Lysine Acetylation in Borrelia burgdorferi B31 Reveals Its Role in Central Metabolism. Frontiers in Microbiology, 9(0), 2036. doi:10.3389/fmicb.2018.02036. PMC6127242

93.) Burgess EJ, Hoyt LR, Randall MJ, Mank MM, Bivona JJ III, Eisenhauer PL, Botten JW, Ballif BA, Lam YW, Wargo MJ, Boyson JE, Ather JL, Poynter ME (2018 Aug 29). Bacterial lipoproteins constitute the TLR2-stimulating activity of Serum Amyloid A. Journal of immunology (Baltimore, Md. : 1950), 201(8), 2377-2384. doi:10.4049/jimmunol.1800503. PMC6179936

94.) Latulippe J, Lotito D, Murby D (2018 Aug 22). A mathematical model for the effects of amyloid beta on intracellular calcium. PLoS ONE, 13(8), e0202503. doi:10.1371/journal.pone.0202503. PMC6105003

95.) Krementsov DN, Asarian L, Fang Q, McGill MM, Teuscher C (2018 Jul 17). Sex-Specific Gene-by-Vitamin D Interactions Regulate Susceptibility to Central Nervous System Autoimmunity. Frontiers in Immunology, 9(0), 1622. doi:10.3389/fimmu.2018.01622. PMC6056725

96.) Sladewski TE, Billington N, Ali MY, Bookwalter CS, Lu H, Krementsova EB, Schroer TA, Trybus KM (2018 Jun 26). Recruitment of two dyneins to an mRNA-dependent Bicaudal D transport complex. eLife, 7(0), e36306. doi:10.7554/eLife.36306. PMC6056235

97.) Loisel DA, Troyer RM, VandeWoude S (2018 Jun 22). High prevalence of Lynx rufus gammaherpesvirus 1 in wild Vermont bobcats. PeerJ, 6(0), e4982. doi:10.7717/peerj.4982. PMC6016526

98.) Munson P, Lam YW, MacPherson M, Beuschel S, Shukla A (2018 Apr 16). Mouse serum exosomal proteomic signature in response to asbestos exposure. Journal of cellular biochemistry, 119(7), 6266-6273. doi:10.1002/jcb.26863. PMC6335961

99.) Munson P, Lam YW, Dragon J, MacPherson M, Shukla A (2018 Mar 19). Exosomes from asbestos-exposed cells modulate gene expression in mesothelial cells. The FASEB Journal, 32(8), 4328-4342. doi:10.1096/fj.201701291RR. PMC6044058

100.) van der Velden JL, Wagner DE, Lahue KG, Abdalla ST, Lam YW, Weiss DJ, Janssen-Heininger YM (2018 Feb 22). TGF-β1-induced deposition of provisional extracellular matrix by tracheal basal cells promotes epithelial-to-mesenchymal transition in a c-Jun NH2-terminal kinase-1-dependent manner. American Journal of Physiology - Lung Cellular and Molecular Physiology, 314(6), L984-L997. doi:10.1152/ajplung.00053.2017. PMC6032072

101.) Graham E, Rymarchyk S, Wood M, Cen Y (2018 Feb 8). Development of Activity-Based Chemical Probes for Human Sirtuins. ACS chemical biology, 13(3), 782-792. doi:10.1021/acschembio.7b00754. PMC5889851

102.) Wood M, Rymarchyk S, Zheng S, Cen Y (2017 Dec 9). Trichostatin A Inhibits Deacetylation of Histone H3 and p53 by SIRT6. Archives of biochemistry and biophysics, 638(0), 8-17. doi:10.1016/j.abb.2017.12.009. PMC5762261

103.) Tacoma R, Gelsinger SL, Lam YW, Scuderi RA, Ebenstein DB, Heinrichs AJ, Greenwood SL (2017 Sep 13). Exploration of the bovine colostrum proteome and effects of heat treatment time on colostrum protein profile. Journal of dairy science, 100(11), 9392-9401. doi:10.3168/jds.2017-13211. PMC6350923

104.) Liu Y, Wang B, Li J, Song Z, Lu B, Chi M, Yang B, Qin D, Lam YW, Li J, Xu D (2017 Sep 5). Salt Response Analysis in Two Rice Cultivars at Seedling Stage. Acta physiologiae plantarum, 39(10), 215. doi:10.1007/s11738-017-2514-6. PMC6858053

105.) Pollard LW, Bookwalter CS, Tang Q, Krementsova EB, Trybus KM, Lowey S (2017 Aug 14). Fission yeast myosin Myo2 is down-regulated in actin affinity by light chain phosphorylation. Proceedings of the National Academy of Sciences of the United States of America, 114(35), E7236-E7244. doi:10.1073/pnas.1703161114. PMC5584420

106.) Runte KE, Bell SP, Selby DE, Häußler TN, Ashikaga T, LeWinter MM, Palmer BM, Meyer M (2017 Aug). Relaxation and the Role of Calcium in Isolated Contracting Myocardium from Patients with Hypertensive Heart Disease and Heart Failure with Preserved Ejection Fraction. Circulation. Heart failure, 10(8), e004311. doi:10.1161/CIRCHEARTFAILURE.117.004311. PMC5567852

107.) Lee CW, Stankowski JN, Chew J, Cook CN, Lam YW, Almeida S, Carlomagno Y, Lau KF, Prudencio M, Gao FB, Bogyo M, Dickson DW, Petrucelli L (2017 Jul 25). The lysosomal protein cathepsin L is a progranulin protease. Molecular Neurodegeneration, 12(0), 55. doi:10.1186/s13024-017-0196-6. PMC5526245

108.) Tacoma R, Fields J, Ebenstein DB, Lam YW, Greenwood SL (2017 Jul 12). Ratio of dietary rumen degradable protein to rumen undegradable protein affects nitrogen partitioning but does not affect the bovine milk proteome produced by mid-lactation Holstein dairy cows. Journal of dairy science, 100(9), 7246-7261. doi:10.3168/jds.2017-12647. PMC6350925

109.) Fabian-Fine R, Anderson CM, Roush MA, Johnson JA, Liu H, French AS, Torkkeli PH (2017 Jul 7). The Distribution of Cholinergic Neurons, and their Co-localization with FMRFamide in Central and Peripheral Neurons of the Spider Cupiennius salei. Cell and tissue research, 370(1), 71-88. doi:10.1007/s00441-017-2652-6. PMC6327323

110.) Vasiliou AK, Anderson DE, Cowell TW, Kong J, Melhado WF, Phillips MD, Whitman JC (2017 Jun 23). Thermal Decomposition Mechanism for Ethanethiol. The journal of physical chemistry. A, 121(26), 4953-4960. doi:10.1021/acs.jpca.7b02629. PMC6283071

111.) Li S, Diego-Limpin PA, Bajrami B, Keshipeddy S, Lam YW, Deng B, Farrokhi V, McShane AJ, Nemati R, Howell AR, Yao X (2017 Jun 5). Scaling Proteome-wide Reactions of Activity-Based Probes. Analytical chemistry, 89(12), 6295-6299. doi:10.1021/acs.analchem.7b01184. PMC6368408

112.) Fortner KA, Bond JP, Austin JW, Boss JM, Budd RC (2017 May 24). The Molecular Signature of Murine T Cell Homeostatic Proliferation Reveals Both Inflammatory and Immune Inhibition Patterns. Journal of autoimmunity, 82(0), 47-61. doi:10.1016/j.jaut.2017.05.003. PMC5902411

113.) Emerson SE, St. Clair RM, Waldron AL, Bruno SR, Duong A, Driscoll HE, Ballif BA, McFarlane S, Ebert AM (2017 May 18). Identification of Target Genes Downstream of Semaphorin6A/PlexinA2 Signaling in Zebrafish. Developmental dynamics : an official publication of the American Association of Anatomists, 246(7), 539-549. doi:10.1002/dvdy.24512. PMC6322676

114.) Toomey CG, Weiss D, Chant A, Ackerman M, Ahlers BA, Lam YW, Ricciardi C, Bourne D, Kraemer-Chant CM (2017 Apr 25). Development and Applications of a Calmodulin-Based Fusion Protein System for the Expression and Purification of WW and Zinc Finger Modules. Advances in biological chemistry, 7(2), 89-106. doi:10.4236/abc.2017.72006. PMC6719719

115.) Thammahong A, Caffrey-Card AK, Dhingra S, Obar JJ, Cramer RA (2017 Apr 25). Aspergillus fumigatus Trehalose-Regulatory Subunit Homolog Moonlights To Mediate Cell Wall Homeostasis through Modulation of Chitin Synthase Activity. mBio, 8(2), e00056-17. doi:10.1128/mBio.00056-17. PMC5405227

116.) Parker CC, Dickson PE, Philip VM, Thomas M, Chesler EJ (2017 Apr 10). Systems genetic analysis in GeneNetwork.org. Current protocols in neuroscience, 79(0), 8.39.1-8.39.20. doi:10.1002/cpns.23. PMC5548442

117.) Clemments AM, Botella P, Landry CC (2017 Mar 13). Spatial Mapping of Protein Adsorption on Mesoporous Silica Nanoparticles by Stochastic Optical Reconstruction Microscopy. Journal of the American Chemical Society, 139(11), 3978-3981. doi:10.1021/jacs.7b01118. PMC7445356

118.) Krementsov DN, Case LK, Dienz O, Raza A, Fang Q, Ather JL, Poynter ME, Boyson JE, Bunn JY, Teuscher C (2017 Feb 27). Genetic variation in chromosome Y regulates susceptibility to influenza A virus infection. Proceedings of the National Academy of Sciences of the United States of America, 114(13), 3491-3496. doi:10.1073/pnas.1620889114. PMC5380050

119.) Uhl FE, Wagner DE, Weiss DJ (2017). Preparation of Decellularized Lung Matrices for Cell Culture and Protein Analysis. Methods in molecular biology (Clifton, N.J.), 1627(0), 253-283. doi:10.1007/978-1-4939-7113-8_18. PMC7456164

120.) Prakash A, Moharana K, Wallace SS, Doublié S (2016 Dec 19). Destabilization of the PCNA trimer mediated by its interaction with the NEIL1 DNA glycosylase. Nucleic Acids Research, 45(5), 2897-2909. doi:10.1093/nar/gkw1282. PMC5389659

121.) Lodh S, Yano J, Valentine MS, Van Houten JL (2016 Oct 1). Voltage-gated calcium channels of Paramecium cilia. The Journal of Experimental Biology, 219(19), 3028-3038. doi:10.1242/jeb.141234. PMC5091652

122.) Krishnamurthy S, Deng B, del Rio R, Buchholz KR, Treeck M, Urban S, Boothroyd J, Lam YW, Ward GE (2016 Sep 13). Not a Simple Tether: Binding of Toxoplasma gondii AMA1 to RON2 during Invasion Protects AMA1 from Rhomboid-Mediated Cleavage and Leads to Dephosphorylation of Its Cytosolic Tail. mBio, 7(5), e00754-16. doi:10.1128/mBio.00754-16. PMC5021801

123.) Prakash A, Cao VB, Doublié S (2016 Aug 12). Phosphorylation Sites Identified in the NEIL1 DNA Glycosylase Are Potential Targets for the JNK1 Kinase. PLoS ONE, 11(8), e0157860. doi:10.1371/journal.pone.0157860. PMC4982613

124.) Platz J, Bonenfant NR, Uhl FE, Coffey AL, McKnight T, Parsons C, Sokocevic D, Borg ZD, Lam YW, Deng B, Fields JG, DeSarno M, Loi R, Hoffman AM, Bianchi J, Dacken B, Petersen T, Wagner DE, Weiss DJ (2016 Aug 1). Comparative Decellularization and Recellularization of Wild-Type and Alpha 1,3 Galactosyltransferase Knockout Pig Lungs: A Model for Ex Vivo Xenogeneic Lung Bioengineering and Transplantation. Tissue Engineering. Part C, Methods, 22(8), 725-739. doi:10.1089/ten.tec.2016.0109. PMC4991572

125.) Balcom IN, Driscoll H, Vincent J, Leduc M (2016 Jul 28). Metagenomic analysis of an ecological wastewater treatment plant’s microbial communities and their potential to metabolize pharmaceuticals. F1000Research, 5(0), 1881. doi:10.12688/f1000research.9157.1. PMC4995686

126.) Tang Q, Billington N, Krementsova EB, Bookwalter CS, Lord M, Trybus KM (2016 Jul 18). A single-headed fission yeast myosin V transports actin in a tropomyosin-dependent manner. The Journal of Cell Biology, 214(2), 167-179. doi:10.1083/jcb.201511102. PMC4949448

127.) Klansky A, Irvin C, Morrison-Taylor A, Ahlstrand S, Labrie D, Haverkamp HC (2016 May 5). No effect of elevated operating lung volumes on airway function during variable workrate exercise in asthmatic humans. Journal of Applied Physiology, 121(1), 89-100. doi:10.1152/japplphysiol.00538.2015. PMC4967247

128.) Godin LM, Sandri BJ, Wagner DE, Meyer CM, Price AP, Akinnola I, Weiss DJ, Panoskaltsis-Mortari A (2016 Mar 8). Decreased Laminin Expression by Human Lung Epithelial Cells and Fibroblasts Cultured in Acellular Lung Scaffolds from Aged Mice. PLoS ONE, 11(3), e0150966. doi:10.1371/journal.pone.0150966. PMC4783067

129.) Tacoma R, Fields J, Ebenstein DB, Lam YW, Greenwood SL (2016 Jan 30). Comparative proteomics dataset of skimmed milk samples from Holstein and Jersey dairy cattle. Data in Brief, 6(0), 843-846. doi:10.1016/j.dib.2016.01.038. PMC4749939

130.) Caballero MC, Alonso AM, Deng B, Attias M, de Souza W, Corvi MM (2016 Jan 26). Identification of new Palmitoylated Proteins in Toxoplasma gondii. Biochimica et biophysica acta, 1864(4), 400-408. doi:10.1016/j.bbapap.2016.01.010. PMC4857766

131.) Lemas D, Lekkas P, Ballif BA, Vigoreaux JO (2015 Dec 9). Intrinsic disorder and multiple phosphorylations constrain the evolution of the flightin N-terminal region. Journal of proteomics, 135(0), 191-200. doi:10.1016/j.jprot.2015.12.006. PMC4762717

132.) Clemments AM, Botella P, Landry CC (2015 Sep 24). Protein Adsorption From Biofluids on Silica Nanoparticles: Corona Analysis as a Function of Particle Diameter and Porosity. ACS applied materials & interfaces, 7(39), 21682-21689. doi:10.1021/acsami.5b07631. PMC5084906

133.) Tacoma R, Fields J, Ebenstein DB, Lam YW, Greenwood SL (2015 Sep 21). Characterization of the bovine milk proteome in early-lactation Holstein and Jersey breeds of dairy cows. Journal of proteomics, 130(0), 200-210. doi:10.1016/j.jprot.2015.09.024. PMC4859431

134.) Cunniff B, Newick K, Nelson KJ, Wozniak AN, Beuschel S, Leavitt B, Bhave A, Butnor K, Koenig A, Chouchani ET, James AM, Haynes AC, Lowther WT, Murphy MP, Shukla A, Heintz NH (2015 May 26). Disabling Mitochondrial Peroxide Metabolism via Combinatorial Targeting of Peroxiredoxin 3 as an Effective Therapeutic Approach for Malignant Mesothelioma. PLoS ONE, 10(5), e0127310. doi:10.1371/journal.pone.0127310. PMC4444329

135.) Smith KP, Fields JG, Voogt RD, Deng B, Lam YW, Mintz KP (2015 Mar 17). Alteration in abundance of specific membrane proteins of Aggregatibacter actinomycetemcomitans is attributed to deletion of the inner membrane protein MorC. Proteomics, 15(11), 1859-1867. doi:10.1002/pmic.201400505. PMC4456248

136.) Smith KP, Fields JG, Voogt RD, Deng B, Lam YW, Mintz KP (2014 Oct 3). The cell envelope proteome of Aggregatibacter actinomycetemcomitans. Molecular oral microbiology, 30(2), 97-110. doi:10.1111/omi.12074. PMC4305030

137.) Westbom CM, Shukla A, MacPherson MB, Yasewicz EC, Miller JM, Beuschel SL, Steele C, Pass HI, Vacek PM, Shukla A (2014 Oct). CREB-Induced Inflammation Is Important for Malignant Mesothelioma Growth. The American Journal of Pathology, 184(10), 2816-2827. doi:10.1016/j.ajpath.2014.06.008. PMC4188864

138.) Deng L, Kabeche R, Wang N, Wu JQ, Moseley JB (2014 Sep 1). Megadalton-node assembly by binding of Skb1 to the membrane anchor Slf1. Molecular Biology of the Cell, 25(17), 2660-2668. doi:10.1091/mbc.E14-04-0896. PMC4148255

139.) Bayir A, Brewer M (2014 Jun 12). Fragmentation of Bicyclic γ-Silyloxy-β-hydroxy-α-diazolactones as an Approach to Ynolides. The Journal of Organic Chemistry, 79(13), 6037-6046. doi:10.1021/jo500634d. PMC4084849