Proteomics: Publications

RRID:SCR_018667

Proteomics Facility iLab Landing Page
  1. Northrop, A. C., Avalone, V., Ellison, A. M., Ballif, B. A., and Gotelli, N. J. (2021) Clockwise and counterclockwise hysteresis characterize state changes in the same aquatic ecosystem. Ecol Lett 24, 94-101
  2. Elko, E. A., Manuel, A. M., White, S., Zito, E., van der Vliet, A., Anathy, V., and Janssen-Heininger, Y. M. W. (2021) Oxidation of peroxiredoxin-4 induces oligomerization and promotes interaction with proteins governing protein folding and endoplasmic reticulum stress. The Journal of biological chemistry, 100665
  3. Cho, J., Costa, S. K., Wierzbicki, R. M., Rigby, W. F. C., and Cheung, A. L. (2021) The extracellular loop of the membrane permease VraG interacts with GraS to sense cationic antimicrobial peptides in Staphylococcus aureus. PLoS Pathog 17, e1009338
  4. Aboushousha, R., Elko, E., Chia, S. B., Manuel, A. M., van de Wetering, C., van der Velden, J., MacPherson, M., Erickson, C., Reisz, J. A., D’Alessandro, A., Wouters, E. F. M., Reynaert, N. L., Lam, Y. W., Anathy, V., van der Vliet, A., Seward, D. J., and Janssen-Heininger, Y. M. W. (2021) Glutathionylation chemistry promotes interleukin-1 beta-mediated glycolytic reprogramming and pro-inflammatory signaling in lung epithelial cells. FASEB journal : official publication of the Federation of American Societies for Experimental Biology 35, e21525
  5. Zhang, F., Deng, C. K., Wang, M., Deng, B., Barber, R., and Huang, G. (2020) Identification of novel alternative splicing biomarkers for breast cancer with LC/MS/MS and RNA-Seq. BMC Bioinformatics 21, 541
  6. Wang, L., Riel, L. P., Bajrami, B., Deng, B., Howell, A. R., and Yao, X. (2020) alpha-Methylene-beta-Lactone Scaffold for Developing Chemical Probes at the Two Ends of the Selectivity Spectrum. Chembiochem
  7. Scuderi, R. A., Lam, Y. W., Ebenstein, D. B., Tacoma, R., Cersosimo, L. M., Kraft, J., Brito, A. F., and Greenwood, S. L. (2020) Comparative analysis of the skim milk and milk fat globule membrane proteomes produced by Jersey cows grazing pastures with different plant species diversity. J Dairy Sci 103, 7498-7508
  8. Schmoker, A. M., Weinert, J. L., Markwood, J. M., Albretsen, K. S., Lunde, M. L., Weir, M. E., Ebert, A. M., Hinkle, K. L., and Ballif, B. A. (2020) FYN and ABL regulate the interaction networks of the DCBLD receptor family. Mol Cell Proteomics
  9. Schmoker, A. M., Perez Pearson, L. M., Cruz, C., Colon Flores, L. G., Branfeild, S., Pagan Torres, F. D., Fonseca, K., Cantres, Y. M., Salgado Ramirez, C. A., Melendez, L. M., Ballif, B. A., and Washington, A. V. (2020) Defining the TLT-1 interactome from resting and activated human platelets. J Proteomics 215, 103638
  10. Panzarino, N. J., Krais, J. J., Cong, K., Peng, M., Mosqueda, M., Nayak, S. U., Bond, S. M., Calvo, J. A., Doshi, M. B., Bere, M., Ou, J., Deng, B., Zhu, L. J., Johnson, N., and Cantor, S. B. (2020) Replication Gaps Underlie BRCA-deficiency and Therapy Response. Cancer Res
  11. Lloyd, J. T., McLaughlin, K., Lubula, M. Y., Gay, J. C., Dest, A., Gao, C., Phillips, M., Tonelli, M., Cornilescu, G., Marunde, M. R., Evans, C. M., Boyson, S. P., Carlson, S., Keogh, M. C., Markley, J. L., Frietze, S., and Glass, K. C. (2020) Structural Insights into the Recognition of Mono- and Diacetylated Histones by the ATAD2B Bromodomain. J Med Chem 63, 12799-12813
  12. Honan, M. C., and Greenwood, S. L. (2020) Characterization of variations within the rumen metaproteome of Holstein dairy cattle relative to morning feed offering. Sci Rep 10, 3179
  13. Honan, M. C., Fahey, M. J., Fischer-Tlustos, A. J., Steele, M. A., and Greenwood, S. L. (2020) Shifts in the Holstein dairy cow milk fat globule membrane proteome that occur during the first week of lactation are affected by parity. J Anim Sci Biotechnol 11, 81
  14. Hasan, M. M., Teixeira, J. E., Lam, Y. W., and Huston, C. D. (2020) Coactosin Phosphorylation Controls Entamoeba histolytica Cell Membrane Protrusions and Cell Motility. mBio 11
  15. Gupta, R., Liu, Y., Wang, H., Nordyke, C. T., Puterbaugh, R. Z., Cui, W., Varga, K., Chu, F., Ke, H., Vashisth, H., and Cote, R. H. (2020) Structural Analysis of the Regulatory GAF Domains of cGMP Phosphodiesterase Elucidates the Allosteric Communication Pathway. J Mol Biol
  16. Fahey, M. J., Fischer, A. J., Steele, M. A., and Greenwood, S. L. (2020) Characterization of the colostrum and transition milk proteomes from primiparous and multiparous Holstein dairy cows. J Dairy Sci 103, 1993-2005
  17. Erdogan, B., St Clair, R. M., Cammarata, G. M., Zaccaro, T., Ballif, B. A., and Lowery, L. A. (2020) Investigating the impact of the phosphorylation status of tyrosine residues within the TACC domain of TACC3 on microtubule behavior during axon growth and guidance. Cytoskeleton (Hoboken) 77, 277-291
  18. Curry, A. M., Barton, E., Kang, W., Mongeluzi, D. V., and Cen, Y. (2020) Development of Second Generation Activity-Based Chemical Probes for Sirtuins. Molecules 26
  19. Chia, S. B., Elko, E. A., Aboushousha, R., Manuel, A. M., van de Wetering, C., Druso, J. E., van der Velden, J., Seward, D. J., Anathy, V., Irvin, C. G., Lam, Y. W., van der Vliet, A., and Janssen-Heininger, Y. M. W. (2020) Dysregulation of the glutaredoxin/S-glutathionylation redox axis in lung diseases. Am J Physiol Cell Physiol 318, C304-C327
  20. Ziegler, C. M., Dang, L., Eisenhauer, P., Kelly, J. A., King, B. R., Klaus, J. P., Manuelyan, I., Mattice, E. B., Shirley, D. J., Weir, M. E., Bruce, E. A., Ballif, B. A., and Botten, J. (2019) NEDD4 family ubiquitin ligases associate with LCMV Z’s PPXY domain and are required for virus budding, but not via direct ubiquitination of Z. PLoS Pathog 15, e1008100
  21. Valentine, M. S., Yano, J., and Van Houten, J. (2019) A Novel Role for Polycystin-2 (Pkd2) in P. tetraurelia as a Probable Mg(2+) Channel Necessary for Mg(2+)-Induced Behavior. Genes (Basel) 10
  22. St Clair, R. M., Dumas, C. M., Williams, K. S., Goldstein, M. T., Stant, E. A., Ebert, A. M., and Ballif, B. A. (2019) PKC induces release of a functional ectodomain of the guidance cue semaphorin6A. FEBS letters
  23. Scuderi, R. A., Ebenstein, D. B., Lam, Y. W., Kraft, J., and Greenwood, S. L. (2019) Inclusion of grape marc in dairy cattle rations alters the bovine milk proteome. J Dairy Res 86, 154-161
  24. Schwartzman, J. A., Lynch, J. B., Flores Ramos, S., Zhou, L., Apicella, M. A., Yew, J. Y., and Ruby, E. G. (2019) Acidic pH promotes lipopolysaccharide modification and alters colonization in a bacteria-animal mutualism. Mol Microbiol
  25. Mikheyeva, I. V., Thomas, J. M., Kolar, S. L., Corvaglia, A. R., Gaiotaa, N., Leo, S., Francois, P., Liu, G. Y., Rawat, M., and Cheung, A. L. (2019) YpdA, a putative bacillithiol disulfide reductase, contributes to cellular redox homeostasis and virulence in Staphylococcus aureus. Mol Microbiol 111, 1039-1056
  26. Lynch, J. B., Schwartzman, J. A., Bennett, B. D., McAnulty, S. J., Knop, M., Nyholm, S. V., and Ruby, E. G. (2019) Ambient pH alters protein content of outer membrane vesicles, driving host development in a beneficial symbiosis. Journal of bacteriology
  27. Keller, J. I., Lima-Cordon, R., Monroy, M. C., Schmoker, A. M., Zhang, F., Howard, A., Ballif, B. A., and Stevens, L. (2019) Protein mass spectrometry detects multiple bloodmeals for enhanced Chagas disease vector ecology. Infect Genet Evol 74, 103998
  28. Corigliano, M. G., Albarracin, R. M., Vilas, J. M., Sanchez Lopez, E. F., Bengoa Luoni, S. A., Deng, B., Farran, I., Veramendi, J., Maiale, S. J., Sander, V. A., and Clemente, M. (2019) Heat treatment alleviates the growth and photosynthetic impairment of transplastomic plants expressing Leishmania infantum Hsp83-Toxoplasma gondii SAG1 fusion protein. Plant Sci 284, 117-126
  29. Wrenn, S. M., Griswold, E. D., Uhl, F. E., Uriarte, J. J., Park, H. E., Coffey, A. L., Dearborn, J. S., Ahlers, B. A., Deng, B., Lam, Y. W., Huston, D. R., Lee, P. C., Wagner, D. E., and Weiss, D. J. (2018) Avian lungs: A novel scaffold for lung bioengineering. PloS one 13, e0198956
  30. Wood, M., Rymarchyk, S., Zheng, S., and Cen, Y. (2018) Trichostatin A inhibits deacetylation of histone H3 and p53 by SIRT6. Archives of biochemistry and biophysics 638, 8-17
  31. van der Velden, J. L., Wagner, D. E., Lahue, K. G., Abdalla, S. T., Lam, Y. W., Weiss, D. J., and Janssen-Heininger, Y. M. W. (2018) TGF-beta1-induced deposition of provisional extracellular matrix by tracheal basal cells promotes epithelial-to-mesenchymal transition in a JNK1-dependent manner. American journal of physiology. Lung cellular and molecular physiology
  32. Sladewski, T. E., Billington, N., Ali, M. Y., Bookwalter, C. S., Lu, H., Krementsova, E. B., Schroer, T. A., and Trybus, K. M. (2018) Recruitment of two dyneins to an mRNA-dependent Bicaudal D transport complex. eLife 7
  33. Sheehe, J. L., Bonev, A. D., Schmoker, A. M., Ballif, B. A., Nelson, M. T., Moon, T. M., and Dostmann, W. R. (2018) Oxidation of cysteine 117 stimulates constitutive activation of the type Ialpha cGMP-dependent protein kinase. The Journal of biological chemistry 293, 16791-16802
  34. Schmoker, A. M., Barritt, S. A., Weir, M. E., Mann, J. E., Hogan, T. C., Ballif, B. A., and Deming, P. B. (2018) Fyn Regulates Binding Partners of Cyclic-AMP Dependent Protein Kinase A. Proteomes 6
  35. Peng, M., Cong, K., Panzarino, N. J., Nayak, S., Calvo, J., Deng, B., Zhu, L. J., Morocz, M., Hegedus, L., Haracska, L., and Cantor, S. B. (2018) Opposing Roles of FANCJ and HLTF Protect Forks and Restrain Replication during Stress. Cell reports 24, 3251-3261
  36. Munson, P., Lam, Y. W., MacPherson, M., Beuschel, S., and Shukla, A. (2018) Mouse serum exosomal proteomic signature in response to asbestos exposure. Journal of cellular biochemistry 119, 6266-6273
  37. Munson, P., Lam, Y. W., Dragon, J., MacPherson, M., and Shukla, A. (2018) Exosomes from asbestos-exposed cells modulate gene expression in mesothelial cells. FASEB journal : official publication of the Federation of American Societies for Experimental Biology, fj201701291RR
  38. Keller, J. I., Schmidt, J. O., Schmoker, A. M., Ballif, B. A., and Stevens, L. (2018) Protein mass spectrometry extends temporal blood meal detection over polymerase chain reaction in mouse-fed Chagas disease vectors. Memorias do Instituto Oswaldo Cruz 113, e180160
  39. Heppner, D. E., Dustin, C. M., Liao, C., Hristova, M., Veith, C., Little, A. C., Ahlers, B. A., White, S. L., Deng, B., Lam, Y. W., Li, J., and van der Vliet, A. (2018) Direct cysteine sulfenylation drives activation of the Src kinase. Nature communications 9, 4522
  40. Graham, E., Rymarchyk, S., Wood, M., and Cen, Y. (2018) Development of Activity-Based Chemical Probes for Human Sirtuins. ACS chemical biology 13, 782-792
  41. Burgess, E. J., Hoyt, L. R., Randall, M. J., Mank, M. M., Bivona, J. J., 3rd, Eisenhauer, P. L., Botten, J. W., Ballif, B. A., Lam, Y. W., Wargo, M. J., Boyson, J. E., Ather, J. L., and Poynter, M. E. (2018) Bacterial Lipoproteins Constitute the TLR2-Stimulating Activity of Serum Amyloid A. Journal of immunology
  42. Bontemps-Gallo, S., Gaviard, C., Richards, C. L., Kentache, T., Raffel, S. J., Lawrence, K. A., Schindler, J. C., Lovelace, J., Dulebohn, D. P., Cluss, R. G., Hardouin, J., and Gherardini, F. C. (2018) Global Profiling of Lysine Acetylation in Borrelia burgdorferi B31 Reveals Its Role in Central Metabolism. Frontiers in microbiology 9, 2036
  43. Ziegler, C. M., Eisenhauer, P., Kelly, J. A., Dang, L. N., Beganovic, V., Bruce, E. A., King, B. R., Shirley, D. J., Weir, M. E., Ballif, B. A., and Botten, J. (2017) A proteomic survey of Junin virus interactions with human proteins reveals host factors required for arenavirus replication. Journal of virology
  44. Uhl, F. E., Wagner, D. E., and Weiss, D. J. (2017) Preparation of Decellularized Lung Matrices for Cell Culture and Protein Analysis. Methods in molecular biology 1627, 253-283
  45. Toomey, C. G., Weiss, D., Chant, A., Ackerman, M., Ahlers, B. A., Lam, Y.-W., Ricciardi, C., Bourne, D., and Kraemer-Chant, C. M. (2017) Development and Applications of a Calmodulin-Based Fusion Protein System for the Expression and Purification of WW and Zinc Finger Modules. Advances in Biological Chemistry 07, 89-106
  46. Thammahong, A., Caffrey-Card, A. K., Dhingra, S., Obar, J. J., and Cramer, R. A. (2017) Aspergillus fumigatus Trehalose-Regulatory Subunit Homolog Moonlights To Mediate Cell Wall Homeostasis through Modulation of Chitin Synthase Activity. mBio 8
  47. Tacoma, R., Gelsinger, S. L., Lam, Y. W., Scuderi, R. A., Ebenstein, D. B., Heinrichs, A. J., and Greenwood, S. L. (2017) Exploration of the bovine colostrum proteome and effects of heat treatment time on colostrum protein profile. Journal of dairy science 100, 9392-9401
  48. Tacoma, R., Fields, J., Ebenstein, D. B., Lam, Y. W., and Greenwood, S. L. (2017) Ratio of dietary rumen degradable protein to rumen undegradable protein affects nitrogen partitioning but does not affect the bovine milk proteome produced by mid-lactation Holstein dairy cows. Journal of dairy science 100, 7246-7261
  49. St Clair, R. M., Emerson, S. E., D’Elia, K. P., Weir, M. E., Schmoker, A. M., Ebert, A. M., and Ballif, B. A. (2017) Fyn-dependent phosphorylation of PlexinA1 and PlexinA2 at conserved tyrosines is essential for zebrafish eye development. The FEBS journal
  50. Schmoker, A. M., Weinert, J. L., Kellett, K. J., Johnson, H. E., Joy, R. M., Weir, M. E., Ebert, A. M., and Ballif, B. A. (2017) Dynamic multi-site phosphorylation by Fyn and Abl drives the interaction between CRKL and the novel scaffolding receptors DCBLD1 and DCBLD2. The Biochemical journal
  51. Prakash, A., Moharana, K., Wallace, S. S., and Doublie, S. (2017) Destabilization of the PCNA trimer mediated by its interaction with the NEIL1 DNA glycosylase. Nucleic acids research 45, 2897-2909
  52. Pollard, L. W., Bookwalter, C. S., Tang, Q., Krementsova, E. B., Trybus, K. M., and Lowey, S. (2017) Fission yeast myosin Myo2 is down-regulated in actin affinity by light chain phosphorylation. Proceedings of the National Academy of Sciences of the United States of America 114, E7236-E7244
  53. Northrop, A. C., Brooks, R., Ellison, A. M., Gotelli, N. J., and Ballif, B. A. (2017) Environmental proteomics reveals taxonomic and functional changes in an enriched aquatic ecosystem. Ecosphere 8
  54. Liu, Y., Wang, B. X., Li, J., Song, Z. Q., Lu, B. G., Chi, M., Yang, B., Liu, J. B., Lam, Y. W., Li, J. X., and Xu, D. Y. (2017) Salt-response analysis in two rice cultivars at seedling stage. Acta Physiol Plant 39
  55. Li, S., Diego-Limpin, P. A., Bajrami, B., Keshipeddy, S., Lam, Y. W., Deng, B., Farrokhi, V., McShane, A. J., Nemati, R., Howell, A. R., and Yao, X. (2017) Scaling Proteome-Wide Reactions of Activity-Based Probes. Analytical chemistry 89, 6295-6299
  56. Lee, C. W., Stankowski, J. N., Chew, J., Cook, C. N., Lam, Y. W., Almeida, S., Carlomagno, Y., Lau, K. F., Prudencio, M., Gao, F. B., Bogyo, M., Dickson, D. W., and Petrucelli, L. (2017) The lysosomal protein cathepsin L is a progranulin protease. Molecular neurodegeneration 12, 55
  57. King, B. R., Hershkowitz, D., Eisenhauer, P. L., Weir, M. E., Ziegler, C. M., Russo, J., Bruce, E. A., Ballif, B. A., and Botten, J. (2017) A Map of the Arenavirus Nucleoprotein-Host Protein Interactome Reveals that Junin Virus Selectively Impairs the Antiviral Activity of Double-Stranded RNA-Activated Protein Kinase (PKR). Journal of virology 91
  58. Keller, J. I., Ballif, B. A., St Clair, R. M., Vincent, J. J., Monroy, M. C., and Stevens, L. (2017) Chagas disease vector blood meal sources identified by protein mass spectrometry. PloS one 12, e0189647
  59. Corwin, T., Woodsmith, J., Apelt, F., Fontaine, J. F., Meierhofer, D., Helmuth, J., Grossmann, A., Andrade-Navarro, M. A., Ballif, B. A., and Stelzl, U. (2017) Defining Human Tyrosine Kinase Phosphorylation Networks Using Yeast as an In Vivo Model Substrate. Cell systems 5, 128-139 e124
  60. Clemments, A. M., Botella, P., and Landry, C. C. (2017) Spatial Mapping of Protein Adsorption on Mesoporous Silica Nanoparticles by Stochastic Optical Reconstruction Microscopy. Journal of the American Chemical Society 139, 3978-3981
  61. Ziegler, C. M., Eisenhauer, P., Bruce, E. A., Weir, M. E., King, B. R., Klaus, J. P., Krementsov, D. N., Shirley, D. J., Ballif, B. A., and Botten, J. (2016) The Lymphocytic Choriomeningitis Virus Matrix Protein PPXY Late Domain Drives the Production of Defective Interfering Particles. PLoS pathogens 12, e1005501
  62. Ziegler, C. M., Eisenhauer, P., Bruce, E. A., Beganovic, V., King, B. R., Weir, M. E., Ballif, B. A., and Botten, J. (2016) A novel phosphoserine motif in the LCMV matrix protein Z regulates the release of infectious virus and defective interfering particles. The Journal of general virology 97, 2084-2089
  63. Weir, M. E., Mann, J. E., Corwin, T., Fulton, Z. W., Hao, J. M., Maniscalco, J. F., Kenney, M. C., Roman Roque, K. M., Chapdelaine, E. F., Stelzl, U., Deming, P. B., Ballif, B. A., and Hinkle, K. L. (2016) Novel autophosphorylation sites of Src family kinases regulate kinase activity and SH2 domain-binding capacity. FEBS letters 590, 1042-1052
  64. Tang, Q., Billington, N., Krementsova, E. B., Bookwalter, C. S., Lord, M., and Trybus, K. M. (2016) A single-headed fission yeast myosin V transports actin in a tropomyosin-dependent manner. The Journal of cell biology 214, 167-179
  65. Tacoma, R., Fields, J., Ebenstein, D. B., Lam, Y. W., and Greenwood, S. L. (2016) Comparative proteomics dataset of skimmed milk samples from Holstein and Jersey dairy cattle. Data in brief 6, 843-846
  66. Prakash, A., Cao, V. B., and Doublie, S. (2016) Phosphorylation Sites Identified in the NEIL1 DNA Glycosylase Are Potential Targets for the JNK1 Kinase. PloS one 11, e0157860
  67. Platz, J., Bonenfant, N. R., Uhl, F. E., Coffey, A. L., McKnight, T., Parsons, C., Sokocevic, D., Borg, Z. D., Lam, Y. W., Deng, B., Fields, J. G., DeSarno, M., Loi, R., Hoffman, A. M., Bianchi, J., Dacken, B., Petersen, T., Wagner, D. E., and Weiss, D. J. (2016) Comparative Decellularization and Recellularization of Wild-Type and Alpha 1,3 Galactosyltransferase Knockout Pig Lungs: A Model for Ex Vivo Xenogeneic Lung Bioengineering and Transplantation. Tissue engineering. Part C, Methods 22, 725-739
  68. Lemas, D., Lekkas, P., Ballif, B. A., and Vigoreaux, J. O. (2016) Intrinsic disorder and multiple phosphorylations constrain the evolution of the flightin N-terminal region. Journal of proteomics 135, 191-200
  69. Krishnamurthy, S., Deng, B., Del Rio, R., Buchholz, K. R., Treeck, M., Urban, S., Boothroyd, J., Lam, Y. W., and Ward, G. E. (2016) Not a Simple Tether: Binding of Toxoplasma gondii AMA1 to RON2 during Invasion Protects AMA1 from Rhomboid-Mediated Cleavage and Leads to Dephosphorylation of Its Cytosolic Tail. mBio 7
  70. Cheerathodi, M., Avci, N. G., Guerrero, P. A., Tang, L. K., Popp, J., Morales, J. E., Chen, Z., Carnero, A., Lang, F. F., Ballif, B. A., Rivera, G. M., and McCarty, J. H. (2016) The Cytoskeletal Adapter Protein Spinophilin Regulates Invadopodia Dynamics and Tumor Cell Invasion in Glioblastoma. Molecular cancer research : MCR 14, 1277-1287
  71. Caballero, M. C., Alonso, A. M., Deng, B., Attias, M., de Souza, W., and Corvi, M. M. (2016) Identification of new palmitoylated proteins in Toxoplasma gondii. Biochimica et biophysica acta 1864, 400-408
  72. Yano, J., Valentine, M. S., and Van Houten, J. L. (2015) Novel Insights into the Development and Function of Cilia Using the Advantages of the Paramecium Cell and Its Many Cilia. Cells 4, 297-314
  73. Xie, Y., Jin, Y., Merenick, B. L., Ding, M., Fetalvero, K. M., Wagner, R. J., Mai, A., Gleim, S., Tucker, D. F., Birnbaum, M. J., Ballif, B. A., Luciano, A. K., Sessa, W. C., Rzucidlo, E. M., Powell, R. J., Hou, L., Zhao, H., Hwa, J., Yu, J., and Martin, K. A. (2015) Phosphorylation of GATA-6 is required for vascular smooth muscle cell differentiation after mTORC1 inhibition. Science signaling 8, ra44
  74. Woodward, M., Previs, M. J., Mader, T. J., and Debold, E. P. (2015) Modifications of myofilament protein phosphorylation and function in response to cardiac arrest induced in a swine model. Frontiers in physiology 6, 199
  75. Tacoma, R., Fields, J., Ebenstein, D. B., Lam, Y. W., and Greenwood, S. L. (2015) Characterization of the bovine milk proteome in early-lactation Holstein and jersey breeds of dairy cows. Journal of proteomics
  76. Smith, K. P., Fields, J. G., Voogt, R. D., Deng, B., Lam, Y. W., and Mintz, K. P. (2015) Alteration in abundance of specific membrane proteins of Aggregatibacter actinomycetemcomitans is attributed to deletion of the inner membrane protein MorC. Proteomics
  77. Schmidts, M., Hou, Y., Cortes, C. R., Mans, D. A., Huber, C., Boldt, K., Patel, M., van Reeuwijk, J., Plaza, J. M., van Beersum, S. E., Yap, Z. M., Letteboer, S. J., Taylor, S. P., Herridge, W., Johnson, C. A., Scambler, P. J., Ueffing, M., Kayserili, H., Krakow, D., King, S. M., Uk10K, Beales, P. L., Al-Gazali, L., Wicking, C., Cormier-Daire, V., Roepman, R., Mitchison, H. M., and Witman, G. B. (2015) TCTEX1D2 mutations underlie Jeune asphyxiating thoracic dystrophy with impaired retrograde intraflagellar transport. Nature communications 6, 7074
  78. Perlini, L. E., Szczurkowska, J., Ballif, B. A., Piccini, A., Sacchetti, S., Giovedi, S., Benfenati, F., and Cancedda, L. (2015) Synapsin III acts downstream of semaphorin 3A/CDK5 signaling to regulate radial migration and orientation of pyramidal neurons in vivo. Cell reports 11, 234-248
  79. Flemer, S., Jr. (2015) Fmoc-Sec(Xan)-OH: synthesis and utility of Fmoc selenocysteine SPPS derivatives with acid-labile sidechain protection. Journal of peptide science : an official publication of the European Peptide Society 21, 53-59
  80. Daniels, G., Ballif, B. A., Helias, V., Saison, C., Grimsley, S., Mannessier, L., Hustinx, H., Lee, E., Cartron, J. P., Peyrard, T., and Arnaud, L. (2015) Lack of the nucleoside transporter ENT1 results in the Augustine-null blood type and ectopic mineralization. Blood 125, 3651-3654
  81. Cunniff, B., Newick, K., Nelson, K. J., Wozniak, A. N., Beuschel, S., Leavitt, B., Bhave, A., Butnor, K., Koenig, A., Chouchani, E. T., James, A. M., Haynes, A. C., Lowther, W. T., Murphy, M. P., Shukla, A., and Heintz, N. H. (2015) Disabling Mitochondrial Peroxide Metabolism via Combinatorial Targeting of Peroxiredoxin 3 as an Effective Therapeutic Approach for Malignant Mesothelioma. PloS one 10, e0127310
  82. Clemments, A. M., Botella, P., and Landry, C. C. (2015) Protein Adsorption From Biofluids on Silica Nanoparticles: Corona Analysis as a Function of Particle Diameter and Porosity. ACS applied materials & interfaces 7, 21682-21689
  83. Cheerathodi, M., Vincent, J. J., and Ballif, B. A. (2015) Quantitative comparison of CrkL-SH3 binding proteins from embryonic murine brain and liver: Implications for developmental signaling and the quantification of protein species variants in bottom-up proteomics. Journal of proteomics 125, 104-111
  84. Awata, J., Song, K., Lin, J., King, S. M., Sanderson, M. J., Nicastro, D., and Witman, G. B. (2015) DRC3 connects the N-DRC to dynein g to regulate flagellar waveform. Molecular biology of the cell 26, 2788-2800
  85. Arnaud, L., Kelley, L. P., Helias, V., Cartron, J. P., and Ballif, B. A. (2015) SMIM1 is a type II transmembrane phosphoprotein and displays the Vel blood group antigen at its carboxyl-terminus. FEBS letters 589, 3624-3630
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