VBRN Publications

Publications that cite VBRN. Publications listed are from PubMedCentral, sorted by publication date. Click on any publication to read. (Links open in new tab.)

1.) Lloyd JT, McLaughlin K, Lubula MY, Gay JC, Dest A, Gao C, Phillips M, Tonelli M, Cornilescu G, Marunde MR, Evans CM, Boyson SP, Carlson S, Keogh MC, Markley JL, Frietze S, Glass KC (2020 Oct 21). Structural Insights into the Recognition of Mono- and Diacetylated Histones by the ATAD2B Bromodomain. Journal of medicinal chemistry, 63(21), 12799-12813. doi:10.1021/acs.jmedchem.0c01178. PMC7884259

2.) Curry AM, Barton E, Kang W, Mongeluzi DV, Cen Y (2020 Dec 22). Development of Second Generation Activity-Based Chemical Probes for Sirtuins. Molecules, 26(1), 11. doi:10.3390/molecules26010011. PMC7792806

3.) Bonney EA, Krebs K, Kim J, Prakash K, Torrance BL, Haynes L, Rincon M (2020 Oct 28). Protective Intranasal Immunization Against Influenza Virus in Infant Mice Is Dependent on IL-6 . Frontiers in Immunology, 11(1), 568978. doi:10.3389/fimmu.2020.568978. PMC7656064

4.) Giddings LA, Chlipala G, Driscoll H, Bhave K, Kunstman K, Green S, Morillo K, Peterson H, Maienschein-Cline M (2020 Sep 8). Seasonal Ely Copper Mine Superfund site shotgun metagenomic and metatranscriptomic data analysis. Data in Brief, 32(1), 106282. doi:10.1016/j.dib.2020.106282. PMC7494679

5.) Uhl FE, Wagner DE, Weiss DJ (2017). Preparation of Decellularized Lung Matrices for Cell Culture and Protein Analysis. Methods in molecular biology (Clifton, N.J.), 1627(1), 253-283. doi:10.1007/978-1-4939-7113-8_18. PMC7456164

6.) Moeller RW, Seehuus M, Simonds J, Lorton E, Randle TS, Richter C, Peisch V (2020 Aug 4). The Differential Role of Coping, Physical Activity, and Mindfulness in College Student Adjustment. Frontiers in Psychology, 11(1), 1858. doi:10.3389/fpsyg.2020.01858. PMC7417773

7.) Giddings LA, Chlipala G, Kunstman K, Green S, Morillo K, Bhave K, Peterson H, Driscoll H, Maienschein-Cline M (2020 Aug 12). Characterization of an acid rock drainage microbiome and transcriptome at the Ely Copper Mine Superfund site. PLoS ONE, 15(8), e0237599. doi:10.1371/journal.pone.0237599. PMC7423320

8.) Merenstein C, Ward J, Allen D (2020 May). Diplorickettsia Bacteria in an Ixodes scapularis Tick, Vermont, USA. Emerging Infectious Diseases, 26(5), 1036-1038. doi:10.3201/eid2605.191135. PMC7181933

9.) Zhang F, Deng CK, Wang M, Deng B, Barber R, Huang G (2020 Dec 3). Identification of novel alternative splicing biomarkers for breast cancer with LC/MS/MS and RNA-Seq. BMC Bioinformatics, 21(Suppl 9), 541. doi:10.1186/s12859-020-03824-8. PMC7713335

10.) Shukla GS, Pero SC, Sun Y‑, Mei L, Zhang F, Sholler G, Krag DN (2019 Nov 16). Multiple antibodies targeting tumor‑specific mutations redirect immune cells to inhibit tumor growth and increase survival in experimental animal models. Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico, 22(7), 1094-1104. doi:10.1007/s12094-019-02235-3. PMC7586733

11.) Clemments AM, Botella P, Landry CC (2017 Mar 13). Spatial Mapping of Protein Adsorption on Mesoporous Silica Nanoparticles by Stochastic Optical Reconstruction Microscopy. Journal of the American Chemical Society, 139(11), 3978-3981. doi:10.1021/jacs.7b01118. PMC7445356

12.) Hasan MM, Teixeira JE, Lam YW, Huston CD (2020 Aug 4). Coactosin Phosphorylation Controls Entamoeba histolytica Cell Membrane Protrusions and Cell Motility. mBio, 11(4), e00660-20. doi:10.1128/mBio.00660-20. PMC7407079

13.) Honan MC, Fahey MJ, Fischer-Tlustos AJ, Steele MA, Greenwood SL (2020 Jul 17). Shifts in the Holstein dairy cow milk fat globule membrane proteome that occur during the first week of lactation are affected by parity. Journal of Animal Science and Biotechnology, 11(4), 81. doi:10.1186/s40104-020-00478-7. PMC7367219

14.) Borgmann-Winter B, Allen D (2019 Oct 14). How the Distance Between Drag-Cloth Checks Affects the Estimate of Adult and Nymphal Ixodes scapularis (Acari: Ixodidae) Density. Journal of Medical Entomology, 57(2), 623-626. doi:10.1093/jme/tjz179. PMC7317148

15.) Towers E, Morrison-Taylor A, Demar J, Klansky A, Craig K, Haverkamp HC (2020 Jan 27). ACUTE AND DAILY EFFECTS OF REPEATED VOLUNTARY HYPERPNEA ON PULMONARY FUNCTION IN HEALTHY ADULTS. European journal of applied physiology, 120(3), 625-633. doi:10.1007/s00421-020-04302-y. PMC7299177

16.) Thompson AF, English EL, Nock AM, Willsey GG, Eckstrom K, Cairns B, Bavelock M, Tighe SW, Foote A, Shulman H, Pericleous A, Gupta S, Kadouri DE, Wargo MJ (2019 Oct 4). Characterizing species interactions that contribute to biofilm formation in a multispecies model of a potable water bacterial community. Microbiology, 166(1), 34-43. doi:10.1099/mic.0.000849. PMC7137775

17.) Honan MC, Greenwood SL (2020 Feb 21). Characterization of variations within the rumen metaproteome of Holstein dairy cattle relative to morning feed offering. Scientific Reports, 10(1), 3179. doi:10.1038/s41598-020-59974-5. PMC7035244

18.) Moeller RW, Seehuus M, Peisch V (2020 Jan 31). Emotional Intelligence, Belongingness, and Mental Health in College Students. Frontiers in Psychology, 11(1), 93. doi:10.3389/fpsyg.2020.00093. PMC7006433

19.) Nott MA, Driscoll HE, Takeda M, Vangala M, Corsi SR, Tighe SW (2020 Jan 22). Advanced biofilm analysis in streams receiving organic deicer runoff. PLoS ONE, 15(1), e0227567. doi:10.1371/journal.pone.0227567. PMC6975536

20.) Lam YW, Deng B, Hood C (2019 Dec). Vermont Genetics Network Proteomics Facility. Journal of Biomolecular Techniques : JBT, 30(Suppl), S41. doi:10.1371/journal.pone.0227567. PMC6975536

21.) Landesman WJ, Mulder K, Fredericks LP, Allan BF (2019 Nov 13). Cross-kingdom analysis of nymphal-stage Ixodes scapularis microbial communities in relation to Borrelia burgdorferi infection and load. FEMS Microbiology Ecology, 95(12), fiz167. doi:10.1093/femsec/fiz167. PMC6859517

22.) Ziegler CM, Dang L, Eisenhauer P, Kelly JA, King BR, Klaus JP, Manuelyan I, Mattice EB, Shirley DJ, Weir ME, Bruce EA, Ballif BA, Botten J (2019 Nov 11). NEDD4 family ubiquitin ligases associate with LCMV Z’s PPXY domain and are required for virus budding, but not via direct ubiquitination of Z. PLoS Pathogens, 15(11), e1008100. doi:10.1371/journal.ppat.1008100. PMC6874086

23.) Chia SB, Elko EA, Aboushousha R, Manuel AM, van de Wetering C, Druso JE, van der Velden J, Seward DJ, Anathy V, Irvin CG, Lam YW, van der Vliet A, Janssen-Heininger YM (2019 Nov 6). Dysregulation of the glutaredoxin/S-glutathionylation redox axis in lung diseases. American Journal of Physiology - Cell Physiology, 318(2), C304-C327. doi:10.1152/ajpcell.00410.2019. PMC7052607

24.) Nabi A, Yano J, Valentine MS, Picariello T, Van Houten JL (2019 Oct 29). SF-Assemblin genes in Paramecium: phylogeny and phenotypes of RNAi silencing on the ciliary-striated rootlets and surface organization. Cilia, 8(2), 2. doi:10.1186/s13630-019-0062-y. PMC6819543

25.) Collins C, Lui Y, Santos AM, Ballif BA, Gogerly-Moragoda AM, Brouwer H, Ross R, Balagurunathan K, Sharma S, Wright GJ, Davis S, Budd RC (2019 Sep 23). Detection of Cell Surface Ligands for Human Synovial γδ T Cells. The Journal of Immunology Author Choice, 203(9), 2369-2376. doi:10.4049/jimmunol.1900451. PMC6804759

26.) Lynch JB, Schwartzman JA, Bennett BD, McAnulty SJ, Knop M, Nyholm SV, Ruby EG (2019 Sep 20). Ambient pH Alters the Protein Content of Outer Membrane Vesicles, Driving Host Development in a Beneficial Symbiosis. Journal of Bacteriology, 201(20), e00319-19. doi:10.1128/JB.00319-19. PMC6755730

27.) Schwartzman JA, Lynch JB, Ramos SF, Zhou L, Apicella MA, Yew JY, Ruby EG (2019 Aug 27). Acidic pH promotes lipopolysaccharide modification and alters colonization in a bacteria-animal mutualism. Molecular microbiology, 112(4), 1326-1338. doi:10.1111/mmi.14365. PMC6823639

28.) St. Clair RM, Dumas CM, Williams KS, Goldstein MT, Stant EA, Ebert AM, Ballif BA (2019 Aug 16). PKC Induces Release of a Functional Ectodomain of the Guidance Cue Semaphorin6A. FEBS letters, 593(21), 3015-3028. doi:10.1002/1873-3468.13561. PMC6848763

29.) Dauerman HL, DeStephan CM, Taatjes Sommer H, Kurchena KC, DeSarno M, Mendoza EG, Henderson A, Schneider DJ (2019 Aug 13). Prolonged Clotting Time Among Patients Undergoing Transcatheter Aortic Valve Replacement. Journal of the American College of Cardiology, 74(6), 820-821. doi:10.1016/j.jacc.2019.06.022. PMC6713224

30.) Keller JI, Lima-Cordón R, Monroy MC, Schmoker AM, Zhang F, Howard A, Ballif BA, Stevens L (2019 Aug 8). Protein mass spectrometry detects multiple bloodmeals for enhanced Chagas disease vector ecology: Protein LC-MS/MS detects multiple bloodmeals. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases, 74(6), 103998. doi:10.1016/j.meegid.2019.103998. PMC6763317

31.) Dash MB (2019 Jul 29). Infraslow coordination of slow wave activity through altered neuronal synchrony. Sleep, 42(12), zsz170. doi:10.1093/sleep/zsz170. PMC6930134

32.) Allen D, Borgmann–Winter B, Bashor L, Ward J (2019 Jul 24). The Density of the Lyme Disease Vector, Ixodes scapularis (Blacklegged Tick), Differs Between the Champlain Valley and Green Mountains, Vermont. Northeastern naturalist, 26(3), 545-560. doi:10.1656/045.026.0307. PMC6655441

33.) Preston JC, Powers B, Kostyun JL, Driscoll H, Zhang F, Zhong J (2019 Jul 18). Implications of region-specific gene expression for development of the partially fused petunia corolla. The Plant journal : for cell and molecular biology, 100(1), 158-175. doi:10.1111/tpj.14436. PMC6763366

34.) Faundez V, Wynne M, Crocker A, Tarquinio D (2019 Jul 17). Molecular Systems Biology of Neurodevelopmental Disorders, Rett Syndrome as an Archetype. Frontiers in Integrative Neuroscience, 13(1), 30. doi:10.3389/fnint.2019.00030. PMC6650571

35.) Riblet NB, Kenneally L, Shiner B, Watts BV (2019 Jun 28). Healthcare processes contributing to suicide risk in veterans during and after residential substance abuse treatment.. Journal of dual diagnosis, 15(4), 217-225. doi:10.1080/15504263.2019.1629053. PMC6868319

36.) Valentine MS, Yano J, Van Houten J (2019 Jun 14). A Novel Role for Polycystin-2 (Pkd2) in P. tetraurelia as a Probable Mg2+ Channel Necessary for Mg2+-Induced Behavior. Genes, 10(6), 455. doi:10.3390/genes10060455. PMC6627415

37.) Symes LB, Wershoven NL, Hoeger LO, Ralston JS, Martinson SJ, ter Hofstede HM, Palmer CM (2019 May 3). Applying and refining DNA analysis to determine the identity of plant material extracted from the digestive tracts of katydids. PeerJ, 7(6), e6808. doi:10.7717/peerj.6808. PMC6501762

38.) Scuderi RA, Ebenstein DB, Lam YW, Kraft J, Greenwood SL (2019 May). Inclusion of grape marc in dairy cattle rations alters the bovine milk proteome. The Journal of Dairy Research, 86(2), 154-161. doi:10.1017/S0022029919000372. PMC7033658

39.) Engel GL, Taber K, Vinton E, Crocker AJ (2019 Apr 16). Studying alcohol use disorder using Drosophila melanogaster in the era of ‘Big Data’. Behavioral and Brain Functions : BBF, 15(2), 7. doi:10.1186/s12993-019-0159-x. PMC6469124

40.) Corigliano MG, Albarracín RM, Vilas JM, Sánchez López EF, Bengoa Luoni SA, Deng B, Farran I, Veramendi J, Maiale SJ, Sander VA, Clemente M (2019 Apr 13). Heat treatment alleviates the growth and photosynthetic impairment of transplastomic plants expressing Leishmania infantum Hsp 83-Toxoplasma gondii SAG1 fusion protein. Plant science : an international journal of experimental plant biology, 284(2), 117-126. doi:10.1016/j.plantsci.2019.04.011. PMC6785835

41.) Moeller RW, Seehuus M (2019 Mar 29). Loneliness as a Mediator for College Students’ Social Skills and Experiences of Depression and Anxiety. Journal of adolescence, 73(2), 1-13. doi:10.1016/j.adolescence.2019.03.006. PMC6534439

42.) Mikheyeva IV, Thomas JM, Kolar SL, Corvaglia AR, Gaïa N, Leo S, Francois P, Liu GY, Rawat M, Cheung AL (2019 Feb 17). YpdA, a putative bacillithiol disulfide reductase, contributes to cellular redox homeostasis and virulence in Staphylococcus aureus. Molecular microbiology, 111(4), 1039-1056. doi:10.1111/mmi.14207. PMC6458089

43.) Carroll CM, Hsiang H, Snyder S, Forsberg J, Dash MB (2019 Feb 5). Cortical zeta-inhibitory peptide injection reduces local sleep need. Sleep, 42(5), zsz028. doi:10.1093/sleep/zsz028. PMC6941713

44.) Glenney B, O’Connor P (2019 Feb 5). Skateparks as hybrid elements of the city. Journal of urban design, 24(6), 840-855. doi:10.1080/13574809.2019.1568189. PMC6830735

45.) Zhang F, Ding L, Cui L, Barber R, Deng B (2019 Jan 31). Identification of long non-coding RNA-related and –coexpressed mRNA biomarkers for hepatocellular carcinoma. BMC Medical Genomics, 12(Suppl 1), 25. doi:10.1186/s12920-019-0472-0. PMC6357343

46.) Landesman WJ, Mulder K, Allan BF, Bashor LA, Keesing F, LoGiudice K, Ostfeld RS (2019 Jan 12). Potential effects of blood meal host on bacterial community composition in Ixodes scapularis nymphs. Ticks and tick-borne diseases, 10(3), 523-527. doi:10.1016/j.ttbdis.2019.01.002. PMC6441379

47.) DURST ME, TURCIOS A, LAURENCE C, MOSKOVITZ E (2019 Jan 10). Dispersion compensation by a liquid lens (DisCoBALL). Applied optics, 58(2), 428-435. doi:10.1364/AO.58.000428. PMC6342488

48.) Landesman WJ, Freedman ZB, Nelson DM (2019 Jan 9). Seasonal, sub-seasonal and diurnal variation of soil bacterial community composition in a temperate deciduous forest. FEMS Microbiology Ecology, 95(2), fiz002. doi:10.1093/femsec/fiz002. PMC6353803

49.) Yacawych WT, Palmer AL, Doczi MA (2019 Jan 4). Insulin Receptor Localization in the Embryonic Avian Hypothalamus. Neuroscience letters, 698(2), 126-132. doi:10.1016/j.neulet.2019.01.009. PMC6435403

50.) Ziegler CM, Eisenhauer P, Manuelyan I, Weir ME, Bruce EA, Ballif BA, Botten J (2018 Dec 9). Host-Driven Phosphorylation Appears to Regulate the Budding Activity of the Lassa Virus Matrix Protein. Pathogens, 7(4), 97. doi:10.3390/pathogens7040097. PMC6313517

51.) Hinkle KL, Olsen D (2018 Nov 15). Exposure to the lampricide TFM elicits an environmental stress response in yeast. FEMS Yeast Research, 19(1), foy121. doi:10.1093/femsyr/foy121. PMC6455944

52.) Tarr EA, Fidler BM, Gee KE, Anderson CM, Jager AK, Gallagher NM, Carroll KP, Fabian-Fine R (2018 Nov 8). Distribution of FMRFamide-related peptides and co-localization with glutamate in Cupiennius salei, an invertebrate model system. Cell and tissue research, 376(1), 83-96. doi:10.1007/s00441-018-2949-0. PMC6451683

53.) Heppner DE, Dustin CM, Liao C, Hristova M, Veith C, Little AC, Ahlers BA, White SL, Deng B, Lam YW, Li J, van der Vliet A (2018 Oct 30). Direct cysteine sulfenylation drives activation of the Src kinase. Nature Communications, 9(1), 4522. doi:10.1038/s41467-018-06790-1. PMC6207713

54.) Schmoker AM, Barritt SA, Weir ME, Mann JE, Hogan TC, Ballif BA, Deming PB (2018 Sep 29). Fyn Regulates Binding Partners of Cyclic-AMP Dependent Protein Kinase A. Proteomes, 6(4), 37. doi:10.3390/proteomes6040037. PMC6313912

55.) Glenney B, Mull S (2018 Sep 25). Skateboarding and the Ecology of Urban Space. Journal of sport and social issues, 42(6), 437-453. doi:10.1177/0193723518800525. PMC6269152

56.) Peng M, Cong K, Panzarino NJ, Nayak S, Calvo J, Deng B, Zhu LJ, Morocz M, Hegedus L, Haracska L, Cantor SB (2018 Sep 18). Opposing Roles of FANCJ and HLTF Protect Forks and Restrain Replication during Stress. Cell reports, 24(12), 3251-3261. doi:10.1016/j.celrep.2018.08.065. PMC6218949

57.) Sheehe JL, Bonev AD, Schmoker AM, Ballif BA, Nelson MT, Moon TM, Dostmann WR (2018 Sep 11). Oxidation of cysteine 117 stimulates constitutive activation of the type Iα cGMP-dependent protein kinase. The Journal of Biological Chemistry, 293(43), 16791-16802. doi:10.1074/jbc.RA118.004363. PMC6204908

58.) Bontemps-Gallo S, Gaviard C, Richards CL, Kentache T, Raffel SJ, Lawrence KA, Schindler JC, Lovelace J, Dulebohn DP, Cluss RG, Hardouin J, Gherardini FC (2018 Aug 31). Global Profiling of Lysine Acetylation in Borrelia burgdorferi B31 Reveals Its Role in Central Metabolism. Frontiers in Microbiology, 9(43), 2036. doi:10.3389/fmicb.2018.02036. PMC6127242

59.) Allen D, Dick CW, Strayer E, Perfecto I, Vandermeer J (2018 Aug 29). Scale and strength oak-mesophyte interactions in a transitional oak-hickory forest. Canadian journal of forest research. Journal canadien de la recherche forestiere, 48(11), 1366-1372. doi:10.1139/cjfr-2018-0131. PMC6261292

60.) Burgess EJ, Hoyt LR, Randall MJ, Mank MM, Bivona JJ III, Eisenhauer PL, Botten JW, Ballif BA, Lam YW, Wargo MJ, Boyson JE, Ather JL, Poynter ME (2018 Aug 29). Bacterial lipoproteins constitute the TLR2-stimulating activity of Serum Amyloid A. Journal of immunology (Baltimore, Md. : 1950), 201(8), 2377-2384. doi:10.4049/jimmunol.1800503. PMC6179936

61.) Keller JI, Schmidt JO, Schmoker AM, Ballif BA, Stevens L (2018 Aug 27). Protein mass spectrometry extends temporal blood meal detection over polymerase chain reaction in mouse-fed Chagas disease vectors. Memórias do Instituto Oswaldo Cruz, 113(10), e180160. doi:10.1590/0074-02760180160. PMC6167943

62.) Latulippe J, Lotito D, Murby D (2018 Aug 22). A mathematical model for the effects of amyloid beta on intracellular calcium. PLoS ONE, 13(8), e0202503. doi:10.1371/journal.pone.0202503. PMC6105003

63.) Ong TW, Allen D, Vandermeer J (2018 Jul 24). Huffaker revisited: spatial heterogeneity and the coupling of ineffective agents in biological control. Ecosphere (Washington, D.C), 9(7), e02299. doi:10.1002/ecs2.2299. PMC6294135

64.) Krementsov DN, Asarian L, Fang Q, McGill MM, Teuscher C (2018 Jul 17). Sex-Specific Gene-by-Vitamin D Interactions Regulate Susceptibility to Central Nervous System Autoimmunity. Frontiers in Immunology, 9(7), 1622. doi:10.3389/fimmu.2018.01622. PMC6056725

65.) Wrenn SM, Griswold ED, Uhl FE, Uriarte JJ, Park HE, Coffey AL, Dearborn JS, Ahlers BA, Deng B, Lam YW, Huston DR, Lee PC, Wagner DE, Weiss DJ (2018 Jun 27). Avian lungs: A novel scaffold for lung bioengineering. PLoS ONE, 13(6), e0198956. doi:10.1371/journal.pone.0198956. PMC6021073

66.) Sladewski TE, Billington N, Ali MY, Bookwalter CS, Lu H, Krementsova EB, Schroer TA, Trybus KM (2018 Jun 26). Recruitment of two dyneins to an mRNA-dependent Bicaudal D transport complex. eLife, 7(6), e36306. doi:10.7554/eLife.36306. PMC6056235

67.) Loisel DA, Troyer RM, VandeWoude S (2018 Jun 22). High prevalence of Lynx rufus gammaherpesvirus 1 in wild Vermont bobcats. PeerJ, 6(6), e4982. doi:10.7717/peerj.4982. PMC6016526

68.) Schmoker AM, Driscoll HE, Geiger SR, Vincent JJ, Ebert AM, Ballif BA (2018 Jun 1). An in silico proteomics screen to predict and prioritize protein–protein interactions dependent on post-translationally modified motifs. Bioinformatics, 34(22), 3898-3906. doi:10.1093/bioinformatics/bty434. PMC6223376

69.) Yuan JT, Gatti DM, Philip VM, Kasparek S, Kreuzman AM, Mansky B, Sharif K, Taterra D, Taylor WM, Thomas M, Ward JO, Holmes A, Chesler EJ, Parker CC (2018 Apr 24). Genome-wide association for testis weight in the diversity outbred mouse population. Mammalian genome : official journal of the International Mammalian Genome Society, 29(5-6), 310-324. doi:10.1007/s00335-018-9745-8. PMC6396879

70.) Munson P, Lam YW, MacPherson M, Beuschel S, Shukla A (2018 Apr 16). Mouse serum exosomal proteomic signature in response to asbestos exposure. Journal of cellular biochemistry, 119(7), 6266-6273. doi:10.1002/jcb.26863. PMC6335961

71.) Munson P, Lam YW, Dragon J, MacPherson M, Shukla A (2018 Mar 19). Exosomes from asbestos-exposed cells modulate gene expression in mesothelial cells. The FASEB Journal, 32(8), 4328-4342. doi:10.1096/fj.201701291RR. PMC6044058

72.) English EL, Schutz KC, Willsey GG, Wargo MJ (2018 Mar 1). Transcriptional Responses of Pseudomonas aeruginosa to Potable Water and Freshwater. Applied and Environmental Microbiology, 84(6), e02350-17. doi:10.1128/AEM.02350-17. PMC5835727

73.) van der Velden JL, Wagner DE, Lahue KG, Abdalla ST, Lam YW, Weiss DJ, Janssen-Heininger YM (2018 Feb 22). TGF-β1-induced deposition of provisional extracellular matrix by tracheal basal cells promotes epithelial-to-mesenchymal transition in a c-Jun NH2-terminal kinase-1-dependent manner. American Journal of Physiology - Lung Cellular and Molecular Physiology, 314(6), L984-L997. doi:10.1152/ajplung.00053.2017. PMC6032072

74.) Graham E, Rymarchyk S, Wood M, Cen Y (2018 Feb 8). Development of Activity-Based Chemical Probes for Human Sirtuins. ACS chemical biology, 13(3), 782-792. doi:10.1021/acschembio.7b00754. PMC5889851

75.) Fairfield H, Falank C, Farrell M, Vary C, Boucher JM, Driscoll H, Liaw L, Rosen CJ, Reagan MR (2018 Jan 31). Development of a 3D Bone Marrow Adipose Tissue Model. Bone, 118(3), 77-88. doi:10.1016/j.bone.2018.01.023. PMC6062483

76.) Ziegler CM, Eisenhauer P, Kelly JA, Dang LN, Beganovic V, Bruce EA, King BR, Shirley DJ, Weir ME, Ballif BA, Botten J (2018 Jan 30). A Proteomics Survey of Junín Virus Interactions with Human Proteins Reveals Host Factors Required for Arenavirus Replication. Journal of Virology, 92(4), e01565-17. doi:10.1128/JVI.01565-17. PMC5790945

77.) Wagner BA, Braddick VC, Batson CG, Cullen BH, Miller LE, Spritzer MD (2017 Dec 29). Effects of testosterone dose on spatial memory among castrated adult male rats. Psychoneuroendocrinology, 89(4), 120-130. doi:10.1016/j.psyneuen.2017.12.025. PMC5878712

78.) Wood M, Rymarchyk S, Zheng S, Cen Y (2017 Dec 9). Trichostatin A Inhibits Deacetylation of Histone H3 and p53 by SIRT6. Archives of biochemistry and biophysics, 638(4), 8-17. doi:10.1016/j.abb.2017.12.009. PMC5762261

79.) Schmoker AM, Weinert JL, Kellett KJ, Johnson HE, Joy RM, Weir ME, Ebert AM, Ballif BA (2017 Nov 21). Dynamic multi-site phosphorylation by Fyn and Abl drives the interaction between CRKL and the novel scaffolding receptors DCBLD1 and DCBLD2. The Biochemical journal, 474(23), 3963-3984. doi:10.1042/BCJ20170615. PMC6029619

80.) St. Clair RM, Emerson SE, D’Elia KP, Weir ME, Schmoker AM, Ebert AM, Ballif BA (2017 Nov 17). Fyn-dependent phosphorylation of PlexinA1 and PlexinA2 at conserved tyrosines is essential for zebrafish eye development. The FEBS journal, 285(1), 72-86. doi:10.1111/febs.14313. PMC5760361

81.) Northrop AC, Brooks R, Ellison AM, Gotelli NJ, Ballif BA (2017 Oct 6). Environmental proteomics reveals taxonomic and functional changes in an enriched aquatic ecosystem. Ecosphere (Washington, D.C), 8(10), e01954. doi:10.1002/ecs2.1954. PMC5697771

82.) Mireault GC, Crockenberg SC, Heilman K, Sparrow JE, Cousineau K, Rainville B (2017 Sep 25). Social, cognitive, and physiological aspects of humour perception from 4 to 8 months: Two longitudinal studies. The British journal of developmental psychology, 36(1), 98-109. doi:10.1111/bjdp.12216. PMC6171116

83.) Tacoma R, Gelsinger SL, Lam YW, Scuderi RA, Ebenstein DB, Heinrichs AJ, Greenwood SL (2017 Sep 13). Exploration of the bovine colostrum proteome and effects of heat treatment time on colostrum protein profile. Journal of dairy science, 100(11), 9392-9401. doi:10.3168/jds.2017-13211. PMC6350923

84.) Liu Y, Wang B, Li J, Song Z, Lu B, Chi M, Yang B, Qin D, Lam YW, Li J, Xu D (2017 Sep 5). Salt Response Analysis in Two Rice Cultivars at Seedling Stage. Acta physiologiae plantarum, 39(10), 215. doi:10.1007/s11738-017-2514-6. PMC6858053

85.) Corwin T, Woodsmith J, Apelt F, Fontaine JF, Meierhofer D, Helmuth J, Grossmann A, Andrade-Navarro MA, Ballif BA, Stelzl U (2017 Aug 23). Defining human tyrosine kinase phosphorylation networks using yeast as an in vivo model substrate. Cell systems, 5(2), 128-139.e4. doi:10.1016/j.cels.2017.08.001. PMC6425277

86.) Pollard LW, Bookwalter CS, Tang Q, Krementsova EB, Trybus KM, Lowey S (2017 Aug 14). Fission yeast myosin Myo2 is down-regulated in actin affinity by light chain phosphorylation. Proceedings of the National Academy of Sciences of the United States of America, 114(35), E7236-E7244. doi:10.1073/pnas.1703161114. PMC5584420

87.) Runte KE, Bell SP, Selby DE, Häußler TN, Ashikaga T, LeWinter MM, Palmer BM, Meyer M (2017 Aug). Relaxation and the Role of Calcium in Isolated Contracting Myocardium from Patients with Hypertensive Heart Disease and Heart Failure with Preserved Ejection Fraction. Circulation. Heart failure, 10(8), e004311. doi:10.1161/CIRCHEARTFAILURE.117.004311. PMC5567852

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169.) Doubleday PF, Ballif BA (2014 Apr 3). Developmentally-Dynamic Murine Brain Proteomes and Phosphoproteomes Revealed by Quantitative Proteomics. Proteomes, 2(2), 191-207. doi:10.3390/proteomes2020191. PMC4146493

170.) CHERIAN S, LAM YW, MCDANIELS I, STRUZIAK M, DELAY RJ (2014 Mar 27). ESTRADIOL RAPIDLY MODULATES ODOR RESPONSES IN MOUSE VOMERONASAL SENSORY NEURONS. Neuroscience, 269(2), 43-58. doi:10.1016/j.neuroscience.2014.03.011. PMC4270699

171.) Miller RW, Duncan AK, Schneebeli ST, Gray DL, Whalley AC (2014 Feb 24). Synthesis and Structural Data of Tetrabenzo[8]circulene. Chemistry (Weinheim an der Bergstrasse, Germany), 20(13), 3705-3711. doi:10.1002/chem.201304657. PMC4371848

172.) Angel SO, Figueras MJ, Alomar ML, Echeverria PC, Deng B (2014 Feb 21). Toxoplasma gondii Hsp90: potential roles in essential cellular processes of the parasite. Parasitology, 141(9), 1138-1147. doi:10.1017/S0031182014000055. PMC4181529

173.) Wagner DE, Bonenfant NR, Parsons C, Sokocevic D, Brooks EM, Borg ZD, Lathrop MJ, Wallis JD, Daly AB, Lam YW, Deng B, DeSarno MJ, Ashikaga T, Loi R, Weiss DJ (2014 Jan 22). Comparative Decellularization and Recellularization of Normal versus Emphysematous Human Lungs. Biomaterials, 35(10), 3281-3297. doi:10.1016/j.biomaterials.2013.12.103. PMC4215725

174.) Hristova M, Veith C, Habibovic A, Lam YW, Deng B, Geiszt M, Janssen-Heininger YM, van der Vliet A (2014 Jan 15). Identification of DUOX1-dependent redox signaling through protein S-glutathionylation in airway epithelial cells. Redox Biology, 2(10), 436-446. doi:10.1016/j.redox.2013.12.030. PMC3949091

175.) Wagner DE, Bonenfant NR, Sokocevic D, DeSarno M, Borg Z, Parsons C, Brooks EM, Platz J, Khalpey Z, Hoganson DM, Deng B, Lam YW, Oldinski RA, Ashikaga T, Weiss DJ (2014 Jan 8). Three-dimensional scaffolds of acellular human and porcine lungs for high throughput studies of lung disease and regeneration. Biomaterials, 35(9), 2664-2679. doi:10.1016/j.biomaterials.2013.11.078. PMC4215726

176.) Ufkin ML, Peterson S, Yang X, Driscoll H, Duarte C, Sathyanarayana P (2014 Jan 8). miR-125a regulates cell cycle, proliferation, and apoptosis by targeting the ErbB Pathway in Acute Myeloid Leukemia. Leukemia research, 38(3), 402-410. doi:10.1016/j.leukres.2013.12.021. PMC4117580

177.) Fetting JL, Guay JA, Karolak MJ, Iozzo RV, Adams DC, Maridas DE, Brown AC, Oxburgh L (2014 Jan 1). FOXD1 promotes nephron progenitor differentiation by repressing decorin in the embryonic kidney. Development (Cambridge, England), 141(1), 17-27. doi:10.1242/dev.089078. PMC3865747

178.) Long PM, Tighe SW, Driscoll HE, Moffett JR, Namboodiri AM, Viapiano MS, Lawler SE, Jaworski DM (2013 Nov 20). Acetate Supplementation Induces Growth Arrest of NG2/PDGFRα-Positive Oligodendroglioma-Derived Tumor-Initiating Cells. PLoS ONE, 8(11), e80714. doi:10.1371/journal.pone.0080714. PMC3835562

179.) Klaus JP, Eisenhauer P, Russo J, Mason AB, Do D, King B, Taatjes D, Cornillez-Ty C, Boyson JE, Thali M, Zheng C, Liao L, Yates JR III, Zhang B, Ballif BA, Botten JW (2013 Nov 13). The Intracellular Cargo Receptor ERGIC-53 Is Required for the Production of Infectious Arenavirus, Coronavirus, and Filovirus Particles. Cell Host & Microbe, 14(5), 522-534. doi:10.1016/j.chom.2013.10.010. PMC3999090

180.) Bercovici DA, Ogilvie JM, Tsvetkov N, Brewer M (2013 Nov 11). Intramolecular Polar [4⊕ + 2]-Cycloadditions of Aryl-1-aza-2-azoniaallene Salts: Unprecedented Reactivity Leading to Polycyclic Protonated Azomethine Imines. Angewandte Chemie (International ed. in English), 52(50), 13338-13341. doi:10.1002/anie.201306553. PMC4219620

181.) Potter RA, Bowser AM, Yang Y, Madalengoitia JS, Ziller JW (2013 Nov 8). Structure-Reactivity Relationships of Zwitterionic 1,3-diaza-Claisen Rearrangements. The Journal of organic chemistry, 78(23), 11772-11782. doi:10.1021/jo401810p. PMC4356197

182.) Jabre ND, Watanabe T, Brewer M (2013 Nov 6). Formal and total synthesis of (±)-cycloclavine. Tetrahedron letters, 56(1), 197-199. doi:10.1016/j.tetlet.2013.10.152. PMC3915717

183.) Suhanovsky MM, Teschke CM (2013 Oct 13). An Intramolecular Chaperone Inserted in Bacteriophage P22 Coat Protein Mediates Its Chaperonin-independent Folding. The Journal of Biological Chemistry, 288(47), 33772-33783. doi:10.1074/jbc.M113.515312. PMC3837121

184.) Tsen AR, Long PM, Driscoll HE, Davies MT, Teasdale BA, Penar PL, Pendlebury WW, Spees JL, Lawler SE, Viapiano MS, Jaworski DM (2013 Sep 30). Triacetin-based acetate supplementation as a chemotherapeutic adjuvant therapy in glioma. International journal of cancer. Journal international du cancer, 134(6), 1300-1310. doi:10.1002/ijc.28465. PMC3947395

185.) Case LK, Wall EH, Dragon JA, Saligrama N, Krementsov DN, Moussawi M, Zachary JF, Huber SA, Blankenhorn EP, Teuscher C (2013 Sep). The Y chromosome as a regulatory element shaping immune cell transcriptomes and susceptibility to autoimmune disease. Genome Research, 23(9), 1474-1485. doi:10.1101/gr.156703.113. PMC3759723

186.) Cheng X, Waters SP (2013 Aug 2). Pyridone Annulation via Tandem Curtius Rearrangement/6π-Electrocyclization: Total Synthesis of (−)-Lyconadin C. Organic letters, 15(16), 4226-4229. doi:10.1021/ol401954f. PMC3788595

187.) Aten TM, Redmond MM, Weaver SO, Love CC, Joy RM, Lapp AS, Rivera OD, Hinkle KL, Ballif BA (2013 Jun 13). Tyrosine Phosphorylation of the orphan receptor ESDN/DCBLD2 serves as a scaffold for the signaling adaptor CrkL. FEBS letters, 587(15), 2313-2318. doi:10.1016/j.febslet.2013.05.064. PMC3759512

188.) Fellows A, Deng B, Mierke D, Robey RB, Nichols RC (2013 Jun 5). Peptides modeled on the RGG domain of AUF1/hnRNP-D regulate 3′UTR-dependent gene expression. International immunopharmacology, 17(1), 132-141. doi:10.1016/j.intimp.2013.05.014. PMC3711235

189.) Zhao FQ (2013 Jun 1). OCTAMER-BINDING TRANSCRIPTION FACTORS: GENOMICS AND FUNCTIONS. Frontiers in bioscience (Landmark edition), 18(1), 1051-1071. doi:10.1016/j.intimp.2013.05.014. PMC3711235

190.) Zhang Z, Giampa GM, Draghici C, Huang Q, Brewer M (2013 Apr 15). Synthesis of demissidine by a ring fragmentation 1,3-dipolar cycloaddition approach. Organic letters, 15(9), 2100-2103. doi:10.1021/ol4004993. PMC3671602

191.) Ballif BA, Helias V, Peyrard T, Menanteau C, Saison C, Lucien N, Bourgouin S, Le Gall M, Cartron JP, Arnaud L (2013 Apr 15). Disruption of SMIM1 causes the Vel− blood type. EMBO Molecular Medicine, 5(5), 751-761. doi:10.1002/emmm.201302466. PMC3662317

192.) Serra AC, Warden PS, Fricker CR, Giese AR (2013 Apr 1). Distribution of Ticks and Prevalence of Borrelia burgdorferi in the Upper Connecticut River Valley of Vermont. Northeastern naturalist, 20(1), 197-204. doi:10.1656/045.020.0116. PMC4249684

193.) Syed K, Porollo A, Lam YW, Grimmett PE, Yadav JS (2013 Apr). CYP63A2, a Catalytically Versatile Fungal P450 Monooxygenase Capable of Oxidizing Higher-Molecular-Weight Polycyclic Aromatic Hydrocarbons, Alkylphenols, and Alkanes. Applied and Environmental Microbiology, 79(8), 2692-2702. doi:10.1128/AEM.03767-12. PMC3623170

194.) Krudysz-Amblo J, Jennings ME II, Knight T, Matthews DE, Mann KG, Butenas S (2013 Feb 20). Disulfide reduction abolishes tissue factor cofactor function. Biochimica et biophysica acta, 1830(6), 3489-3496. doi:10.1016/j.bbagen.2013.02.013. PMC3674504

195.) Sokocevic D, Bonenfant NR, Wagner DE, Borg ZD, Lathrop MJ, Lam YW, Deng B, DeSarno MJ, Ashikaga T, Loi R, Hoffman AM, Weiss DJ (2013 Feb 4). The effect of age and emphysematous and fibrotic injury on the re-cellularization of de-cellularized lungs. Biomaterials, 34(13), 3256-3269. doi:10.1016/j.biomaterials.2013.01.028. PMC4215729

196.) Bonenfant NR, Sokocevic D, Wagner DE, Borg ZD, Lathrop M, Lam YW, Deng B, DeSarno M, Ashikaga T, Loi R, Weiss DJ (2013 Feb 4). The Effects of Storage and Sterilization on De-Cellularized and Re-Cellularized Whole Lung. Biomaterials, 34(13), 3231-3245. doi:10.1016/j.biomaterials.2013.01.031. PMC4201372

197.) Kimble MO, Fleming K, Bennion KA (2013 Jan 17). Contributors to Hypervigilance in a Military and Civilian Sample. Journal of interpersonal violence, 28(8), 1672-1692. doi:10.1177/0886260512468319. PMC4157995

198.) Bior BK, Ballif BA (2012 Nov 21). Dab1 stabilizes its interaction with Cin85 by suppressing Cin85 phosphorylation at serine 587. FEBS letters, 587(1), 60-66. doi:10.1016/j.febslet.2012.10.051. PMC3532509

199.) Yano J, Rajendran A, Valentine MS, Saha M, Ballif BA, Van Houten JL (2012 Nov 10). Proteomic analysis of the cilia membrane of Paramecium tetraurelia. Journal of proteomics, 78(1), 113-122. doi:10.1016/j.jprot.2012.09.040. PMC3667161

200.) Jabre ND, Brewer M (2012 Oct 15). Stereoelectronic effects in the fragmentation of γ-silyloxy-β-hydroxy-α-diazocarbonyl compounds. The Journal of organic chemistry, 77(21), 9910-9914. doi:10.1021/jo301944t. PMC3489280

201.) Saha M, Carriere A, Cheerathodi M, Zhang X, Lavoie G, Rush J, Roux PP, Ballif BA (2012 Oct 1). RSK phosphorylates SOS1 creating 14-3-3 docking sites and negatively regulating MAPK activation. The Biochemical journal, 447(1), 159-166. doi:10.1042/BJ20120938. PMC4198020

202.) Previs MJ, Previs SB, Gulick J, Robbins J, Warshaw DM (2012 Aug 23). Molecular Mechanics of Cardiac Myosin Binding Protein-C in Native Thick Filaments . Science (New York, N.Y.), 337(6099), 1215-1218. doi:10.1126/science.1223602. PMC3561468

203.) Sheftic SR, Garcia PP, White E, Robinson VL, Gage DJ, Alexandrescu AT (2012 Aug 21). NMR Structure and Dynamics of the Response Regulator Sma0114 from Sinorhizobium meliloti. Biochemistry, 51(35), 6932-6941. doi:10.1021/bi300922z. PMC4346371

204.) Anjum R, Pae E, Blenis J, Ballif BA (2012 Aug 10). TPCK inhibits AGC kinases by direct activation loop adduction at phenylalanine-directed cysteine residues. FEBS letters, 586(19), 3471-3476. doi:10.1016/j.febslet.2012.07.075. PMC3606710

205.) Goswami T, Li X, Smith AM, Luderowski EM, Vincent JJ, Rush J, Ballif BA (2012 Jul). Comparative Phosphoproteomic Analysis of Neonatal and Adult Murine Brain. Proteomics, 12(13), 10.1002/pmic.201200003. doi:10.1002/pmic.201200003. PMC3816108

206.) Zhang A, Petrov KO, Hyun ER, Liu Z, Gerber SA, Myers LC (2012 Jul). The Tlo Proteins Are Stoichiometric Components of Candida albicans Mediator Anchored via the Med3 Subunit. Eukaryotic Cell, 11(7), 874-884. doi:10.1128/EC.00095-12. PMC3416505

207.) Sathyanarayana P, Dev A, Pradeep A, Ufkin M, Licht JD, Wojchowski DM (2012 Jun 7). Spry1 as a novel regulator of erythropoiesis, EPO/EPOR target, and suppressor of JAK2. Blood, 119(23), 5522-5531. doi:10.1182/blood-2011-11-392571. PMC3369686

208.) Bentley PA, Shao Y, Misra Y, Morielli AD, Zhao FQ (2012 Mar). Characterization of Bovine Glucose Transporter 1 Kinetics and Substrate Specificities in Xenopus Oocytes. Journal of dairy science, 95(3), 1188-1197. doi:10.3168/jds.2011-4430. PMC4337999

209.) Saison C, Peyrard T, Landre C, Ballif BA, Schlosser KA, Dettori I, Chicheportiche C, Nemeth P, Cartron JP, Arnaud L (2012 Feb 20). A new AQP1 null allele identified in a Gypsy woman who developed an anti-CO3 during her first pregnancy. Vox sanguinis, 103(2), 137-144. doi:10.1111/j.1423-0410.2012.01590.x. PMC4201376

210.) Helias V, Saison C, Ballif BA, Peyrard T, Takahashi J, Takahashi H, Tanaka M, Deybach JC, Puy H, Le Gall M, Sureau C, Pham BN, Le Pennec PY, Tani Y, Cartron JP, Arnaud L (2012 Jan 15). The human porphyrin transporter ABCB6 is dispensable for erythropoiesis but responsible for the new blood group system Langereis. Nature genetics, 44(2), 170-173. doi:10.1038/ng.1069. PMC3664204

211.) Saison C, Helias V, Ballif BA, Peyrard T, Puy H, Miyazaki T, Perrot S, Vayssier-Taussat M, Waldner M, Pennec PY, Cartron JP, Arnaud L (2012 Jan 15). Null alleles of ABCG2 encoding the breast cancer resistance protein define the new blood group system Junior. Nature genetics, 44(2), 174-177. doi:10.1038/ng.1070. PMC3653631

212.) Wall EH, McFadden TB (2011 Dec 28). A local affair: how the mammary gland adapts to changes in milking frequency. Journal of animal science, 90(5), 1695-1707. doi:10.2527/jas.2011-4790. PMC4354877

213.) Gotelli NJ, Smith AM, Ellison AM, Ballif BA (2011 May 2). Proteomic Characterization of the Major Arthropod Associates of the Carnivorous Pitcher Plant Sarracenia purpurea. Proteomics, 11(11), 2354-2358. doi:10.1002/pmic.201000256. PMC3517077

214.) Sheftic SR, Garcia PP, Robinson VL, Gage DJ, Alexandrescu AT (2010 Oct 10). NMR assignments for the Sinorhizobium meliloti response regulator Sma0114. Biomolecular NMR assignments, 5(1), 55-58. doi:10.1007/s12104-010-9266-1. PMC4343204

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